Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e11
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 33 0.31
10_06_0035 - 9896289-9896390,9897394-9897503,9897587-9897715,989... 31 0.71
12_01_0101 - 779047-779298,779459-779711,779857-780005,780033-78... 31 1.2
11_01_0101 - 738305-738556,738723-738977,739306-739554,739649-73... 31 1.2
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 31 1.2
03_02_0054 + 5292167-5292336,5292434-5292526,5292828-5293003,529... 30 1.6
06_03_1036 + 27053480-27053729,27054616-27054704,27054881-270549... 30 2.2
04_03_0918 - 20806627-20806724,20807674-20807962 29 2.9
12_01_1041 - 10711362-10711428,10711571-10712262,10712622-107127... 29 3.8
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808... 29 3.8
07_03_1553 - 27653473-27653490,27653634-27653673,27653852-276539... 29 3.8
06_01_0393 + 2831676-2831876,2831986-2832101,2832340-2832421,283... 28 6.6
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232... 28 6.6
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 28 8.7
07_03_0419 - 17993478-17993777,17994045-17994195,17994799-179950... 28 8.7
04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053 28 8.7
04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600 28 8.7
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 28 8.7
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 32.7 bits (71), Expect = 0.31
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 8/101 (7%)
Frame = +1
Query: 439 PDKPWKGQQ---NEPNPAVVGMSGIQQ-TPVGGEPQ----GQASPGIFNSRGAADGSDIS 594
P PW+ QQ N P P +G +Q PVG PQ GQ G F S +
Sbjct: 422 PPPPWEIQQSMDNPPQPTQLGQMPLQPGQPVGMHPQSPHSGQFGQGSFMSPQQMANGQLG 481
Query: 595 SRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQSHPV 717
+ P PQ + + +YP + N+ S P+
Sbjct: 482 GTQPRQSPQPQSAPNLQYGGMMMYPNSMQVNQGAGMYSQPM 522
>10_06_0035 -
9896289-9896390,9897394-9897503,9897587-9897715,
9898734-9898800,9898888-9898970,9899878-9899959,
9900049-9900125,9900206-9900289,9900368-9900437,
9900580-9900668,9900921-9901613,9902833-9903142
Length = 631
Score = 31.5 bits (68), Expect = 0.71
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV + +++ +PW W D+ T RC ++D KY
Sbjct: 288 QLCVFQVAKESKKPWIWW-DYVTDFHIRCPMKDKKY 322
>12_01_0101 -
779047-779298,779459-779711,779857-780005,780033-780281,
780377-780571,780681-780788,780935-781156,781669-781986,
781988-782615,783059-783135,783161-783267,783491-783619,
783763-783820,783902-783984,784458-784539,784617-784693,
784827-784910,784999-785068,785146-785234,785319-786008,
786485-786797
Length = 1410
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>11_01_0101 -
738305-738556,738723-738977,739306-739554,739649-739843,
739953-740060,740184-740405,740806-741390,741495-741863,
742423-742529,742755-742883,743027-743084,743166-743248,
744115-744196,744274-744350,744477-744560,744649-744718,
744796-744884,744965-745654,746127-746439
Length = 1338
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV K +++ +PW W D+ T RC +++ KY
Sbjct: 288 QVCVYKVAKEHGKPWL-WWDYVTDFAIRCPMKEKKY 322
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 1/76 (1%)
Frame = +1
Query: 424 PGELFPDKPWKGQQNEPNPAVVGMSGIQQTPVGGEP-QGQASPGIFNSRGAADGSDISSR 600
P ++ P ++ PNP G QQ P P Q AS N AA+G + S
Sbjct: 1938 PSQMADASPSPAREPSPNPVQAGAPPEQQNPTPPNPVQAGASSEQQNPATAAEGVETRST 1997
Query: 601 RFIDYPAPQMQDSPRR 648
R I+ Q+ R
Sbjct: 1998 RTINLTERARQNRQAR 2013
>03_02_0054 +
5292167-5292336,5292434-5292526,5292828-5293003,
5293076-5293122,5293732-5293801,5293960-5294186,
5294274-5294327,5294470-5294545,5294679-5294884
Length = 372
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -3
Query: 690 PIRSVKQRVHCGALSSGAVLHLRRGVVDKPTAANIAA 580
P +V + CG L++GA+LHL V A A
Sbjct: 20 PALAVASNIQCGPLAAGAMLHLAAAVASNAAAGKAQA 56
>06_03_1036 +
27053480-27053729,27054616-27054704,27054881-27054950,
27055145-27055228,27055332-27055408,27055519-27055583,
27055723-27055765,27055889-27055952,27056126-27056254,
27056522-27056625,27056724-27056828
Length = 359
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +1
Query: 154 QACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
Q CV + + + +PW W D+ ++ RC +++ KY
Sbjct: 31 QLCVHRVANETGRPWAWW-DYVMDYKIRCSMKEKKY 65
>04_03_0918 - 20806627-20806724,20807674-20807962
Length = 128
Score = 29.5 bits (63), Expect = 2.9
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 393 WRENSAN-QRAAWRTVPR*TMEG--PTKRAKSCCCRNERHPADTGRWRAPGSGVSWN 554
WR A +R W MEG P + A E++P+ G WR GSG W+
Sbjct: 33 WRRMGAEPERRRWMAAAA-AMEGAEPERPAADVSDGWEQNPSGGGGWRHRGSGWGWS 88
>12_01_1041 -
10711362-10711428,10711571-10712262,10712622-10712777,
10712885-10713957,10714422-10714524,10714694-10714876,
10715007-10715099,10715379-10715564,10716530-10716793
Length = 938
Score = 29.1 bits (62), Expect = 3.8
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Frame = +1
Query: 397 ERIVQTRGQ-PGELFPDKPWK------GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPGI 555
ERI+ +G+ E PD+PWK G ++ VG SG + + Q +
Sbjct: 693 ERILSEKGRRERERLPDRPWKIKTNPTGYLHQHTSPEVGCSGASTGGITID-QNSSQQDY 751
Query: 556 FNSRGAADGSDISSRRFIDYPAPQMQDS 639
S A+G R I++ + Q+Q S
Sbjct: 752 SRSSVPAEGGVFQKRALINHVSEQIQTS 779
>10_08_0814 -
20779400-20779487,20779780-20780030,20780528-20780812,
20781563-20782008,20782095-20782485
Length = 486
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 473 GSFCWPFHGLSGNSSPGCPLVCTIL 399
GSF WPF G +S GC ++C +L
Sbjct: 435 GSFFWPF---VGGTSSGCFMICIVL 456
>07_03_1553 -
27653473-27653490,27653634-27653673,27653852-27653939,
27654150-27654230,27654644-27655084,27655692-27656325
Length = 433
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 400 RIVQTRGQPGELFPDKPWK--GQQNEPNPAVVGMSGIQQTPVGGEPQGQASPG 552
R++ T G+ + P+KPW + +P+P G G+ + P G +P G ++ G
Sbjct: 55 RLLSTSGRDDD--PNKPWAFTPESGDPDPFAAG-EGV-EAPAGEDPLGLSAAG 103
>06_01_0393 +
2831676-2831876,2831986-2832101,2832340-2832421,
2832515-2832671,2832755-2832848,2833942-2834008,
2834464-2835009
Length = 420
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +1
Query: 115 LVLPALSAEDVSYQACVDKYSRKGYQPWQEWSDHYTCHRYRCEI 246
+ +PA +A S AC + Q + E S TCH RC+I
Sbjct: 266 MTIPAEAASSSSAFACAVAALAEQQQMYGEASSTATCHTSRCDI 309
>01_06_1504 +
37821676-37821778,37821855-37822072,37822713-37823242,
37824040-37824483,37824923-37825616
Length = 662
Score = 28.3 bits (60), Expect = 6.6
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = +3
Query: 465 KRAKSCCCRNERHPADTG-RWRAPGSGVSWNI*QQRSSGWQRY*QPSVYRLPRAADAGQP 641
KR K CC A+ G R G+ V+W Q RS G QR + ++ ++A G P
Sbjct: 340 KRPKRCCLVPGSPLAEHGERPAGGGTEVAWASSQGRSGGMQRAGGRVLQQVRKSAGGGAP 399
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Frame = +3
Query: 459 PTKRAK---SCCCRNERHPADTGRWRAP 533
P+KR K SCC E PA G RAP
Sbjct: 73 PSKRLKPSSSCCSGKENRPAAAGSGRAP 100
>07_03_0419 -
17993478-17993777,17994045-17994195,17994799-17995036,
17995133-17995343,17995440-17995618,17995735-17995833,
17996646-17997531
Length = 687
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 641 PDESAPQCTRCLTERIGNTT 700
PD S C +CL + +GNTT
Sbjct: 218 PDMSGGDCRQCLQDLVGNTT 237
>04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053
Length = 328
Score = 27.9 bits (59), Expect = 8.7
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 545 LLEYLTAEEQRMAAILAAVGLSTTPRRRCRTA-PDESAPQCTRC 673
L LTAEEQ + A L + G + RRR R A P E C C
Sbjct: 39 LASALTAEEQEVLAYLLSGGGAAGGRRRRRGAHPPEMGCGCFGC 82
>04_01_0453 + 5869627-5870232,5870383-5870897,5870964-5871600
Length = 585
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +1
Query: 499 GIQQTPVGGEPQGQASPGIFNSRGAADGSDISSRRFIDYPAP 624
G+ P GG G P F S DG +S+ +F P P
Sbjct: 80 GLNAGPTGGGFNGVGFPAPFGSVARPDGGGVSAGKFGVAPGP 121
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 151 YQACVDKYSRKGYQPWQEWSDHYTCHRYRCEIRDGKY 261
+Q CV K + + +PW W D+ RC +++ KY
Sbjct: 330 HQICVFKAANESGKPWL-WWDYVHDFSIRCPMKEKKY 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,552,272
Number of Sequences: 37544
Number of extensions: 542135
Number of successful extensions: 1769
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1764
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -