Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e11
(728 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14) 30 1.7
SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1) 29 5.1
SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8) 29 5.1
SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034) 28 6.7
SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17) 28 8.9
SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4) 28 8.9
>SB_39216| Best HMM Match : WD40 (HMM E-Value=1.1e-14)
Length = 867
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -3
Query: 330 DVFVAFQCVFRYFWFSTSDSSYEVFPVSDLASVAVA--RVVIRPLLPRLVT 184
D F+A RY T +Y +S +A +A++ RV + P P +VT
Sbjct: 584 DRFIAITRPLRYITLVTKSKTYTAIVISSIACLALSLIRVFLTPYFPAVVT 634
>SB_10512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 29.9 bits (64), Expect = 2.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 256 KYFIAAVGCRKPKIPENALECHEYIEDENVEFPTCCARLRC 378
K ++ A +KP +P++ HE + + C R RC
Sbjct: 22 KTYLIACLAQKPGVPQDTRHSHEPLPQRKISLIVCSTRTRC 62
>SB_53036| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 745
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 372 QSRTARGEFDILIFDVFVAFQCVFRYFWFSTSDSSYEVFPVSD 244
+SR RG+F++LIF CV WF + + E++ + +
Sbjct: 317 RSRDLRGKFELLIFSAIRKMACV---VWFENLEETTELYSLME 356
>SB_57782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 310
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = -1
Query: 140 SADRAGKTRQHNINNAPNCFPCCIL 66
SA+ K R H+ N +CF CCIL
Sbjct: 279 SANDKKKKRLHDSANQKSCFTCCIL 303
>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 908
Score = 28.7 bits (61), Expect = 5.1
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 596 AVGLSTTPRRRCRTAPDESAP 658
AV TP +RCRT+PD S P
Sbjct: 798 AVESGETPPKRCRTSPDPSDP 818
>SB_54236| Best HMM Match : bZIP_1 (HMM E-Value=1.1)
Length = 1188
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 292 KIPENALECHEYIEDENVEFPT 357
++ E+ LEC EYI ++N EF T
Sbjct: 513 EMSESILECFEYIPEKNTEFMT 534
>SB_17698| Best HMM Match : Neuromodulin (HMM E-Value=2.8)
Length = 436
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/63 (26%), Positives = 24/63 (38%)
Frame = +1
Query: 529 PQGQASPGIFNSRGAADGSDISSRRFIDYPAPQMQDSPRRKRSTVYPLFDRTNREHNYQS 708
PQ SPG G DG+ + + Y +P S R RS L + +E
Sbjct: 342 PQTPKSPGAGRHSGGDDGASTQTGMYQSYVSPMKTISEVRSRSDQIDLETQRGKESKASI 401
Query: 709 HPV 717
P+
Sbjct: 402 KPI 404
>SB_43702| Best HMM Match : SERTA (HMM E-Value=0.034)
Length = 351
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 220 TCHRYRCEIRDGKYFIAAVGCRKPKIPENALECHEYIED 336
T R RCEI + +YF A R EN + E + D
Sbjct: 42 TVRRLRCEIENERYFTARPAKRLKMSHENKADIEEKVPD 80
>SB_18916| Best HMM Match : GPS (HMM E-Value=1e-17)
Length = 1470
Score = 27.9 bits (59), Expect = 8.9
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Frame = +1
Query: 478 PAVVGMSGIQQTPVGGEPQGQA---SPGIFNSRGAADGSDISSRRF---IDYPAPQMQDS 639
P+++G + T G P+ Q S G N+ G I S ++ PAP + +S
Sbjct: 721 PSLIGQPAMTATRPPGTPKEQTNTPSSGQQNAIGIGLKDRIDSLLAPGTLEQPAPDILNS 780
Query: 640 PRRKRSTVYPLFDRT 684
P ST P D+T
Sbjct: 781 PEGAYSTEQPALDKT 795
>SB_24494| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 518
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 276 RMSKTKNTGKRTGMPRIHRR*ECRIPHVLCAIA 374
+M + + GK G IH R +CR P LC +A
Sbjct: 367 KMVGSISNGKLMGTIDIHSRRKCRNPRSLCVVA 399
>SB_16907| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 886
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/21 (61%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 421 QPGELF-PDKPWKGQQNEPNP 480
QP ELF P+ P K QQN+P P
Sbjct: 121 QPVELFAPNSPPKPQQNQPKP 141
>SB_12229| Best HMM Match : DUF433 (HMM E-Value=1.4)
Length = 351
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = -3
Query: 669 RVHCGALS--SGAVLHLRRGVVDKPTAANIAAIRCSSAVKYSRRRLTLGLATDRCLLDAA 496
R CG+LS G ++ RRGV N RC V + RR L L + R L +
Sbjct: 163 RTLCGSLSLRCGRLMASRRGVTRSTCNTNGTDTRCQHEVSSNTRRTGLPLNSIRLPLSSL 222
Query: 495 HSD 487
D
Sbjct: 223 IPD 225
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,370,624
Number of Sequences: 59808
Number of extensions: 582802
Number of successful extensions: 1832
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1828
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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