Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e08
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    31   0.17 
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    27   2.1  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.7  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   4.7  
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|...    26   6.3  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    26   6.3  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    26   6.3  
SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1 |Schizosaccharo...    25   8.3  
SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator Tip4...    25   8.3  

>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 195 LVSLNTVFAESKKRYVNVDDAEKIEVIDLTQATTWRDLSEY 317
           L +L T+  E KK     + A KI ++DL      +DLS Y
Sbjct: 392 LANLETMVLEKKKAVATREAANKIRLVDLNDLELQKDLSTY 432


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 243 NVDDAEKIEVIDLTQATTWRDLSEYYEAIEKR 338
           NVDD E  + +D+T AT+ ++ S  Y +++++
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRK 380


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +3

Query: 462 SIIDVTGLSNTNPPLVLTLDVAQQWISMKHDPREPTLLLFK 584
           +I D  GL   NP  +LT D A+Q++     P+E   L  K
Sbjct: 221 NICDHMGLQIDNPMNILTQDTARQFLG-NSSPKEKYQLFMK 260


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +3

Query: 477 TGLSNTNPPLVLTLDVAQQWISMKHDPREPTLLLFKFGWSEEDTHKKVRS 626
           +G SNTN   +     A    S    P   +  L K GW E+  + ++ S
Sbjct: 444 SGFSNTNSYAIEETSRALMGTSKTRKPENKSKYLIKNGWFEDSLNSEIWS 493


>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
           Abc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1469

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 204 LNTVFAESKKRYVNVDDAEKIEVIDLTQATTWR 302
           LN +   +K+R V VDD   I   D  +A T+R
Sbjct: 243 LNPLVLTAKRRVVEVDDTPVIPDYDKNKAWTYR 275


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/53 (20%), Positives = 27/53 (50%)
 Frame = +3

Query: 207 NTVFAESKKRYVNVDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKLCLNCGV 365
           +TV   S + +V +++      ++  + T+ ++  E  + + +  K+C  CGV
Sbjct: 146 STVGGSSSQEFVKLEEKHYSPSLNAMEQTSPKEEDEKSDKVPRVDKVCFTCGV 198


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
 Frame = +3

Query: 156 KMRKLNEKIAFFYLVSLNTVFAESKKRYVNVDDAEKIEVIDLTQATTWR-DLSEYYEAIE 332
           KMR+L  K   F+ V L+T+F+      +      +I ++ L ++  +  ++    +A E
Sbjct: 225 KMRRLGSKFWLFFSVLLSTLFSVQFAMTLVRASGVRISLVSLIESLPFLINVVALDKAAE 284

Query: 333 KRWKLCLNCGVPGLGTAMHMEL 398
              ++   C V    + MH ++
Sbjct: 285 LTRQVITRCSVSDSHSPMHEDI 306


>SPBC36B7.04 |||tRNA dihydrouridine synthase Dus1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 496 FVLLRPVTSIIDNLVTR*SGGMTERCMEASPPGSSM 389
           F L+RP+ SI  ++ ++ + G T R  E  PP  +M
Sbjct: 290 FKLMRPLLSIHTDIRSKLAQGCTPRDFETFPPVVAM 325


>SPCC4B3.16 |tip41||TIP41-like type 2a phosphatase regulator
           Tip41|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/42 (23%), Positives = 19/42 (45%)
 Frame = +3

Query: 471 DVTGLSNTNPPLVLTLDVAQQWISMKHDPREPTLLLFKFGWS 596
           D   +  T P  V+ +  A+ W   +  P E   +++ F W+
Sbjct: 64  DALKMVGTKPEDVMQVSFAKDWAKSRIKPGEEYPVIYPFDWT 105


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,842
Number of Sequences: 5004
Number of extensions: 50763
Number of successful extensions: 133
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)