Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2e08
(722 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1269 + 27462644-27463612 32 0.40
12_02_0291 + 16951154-16952740 31 0.70
04_03_0850 - 20269047-20270595,20270708-20270751,20271248-202713... 30 2.1
11_04_0131 + 13792531-13792632,13795943-13796110 29 2.8
10_07_0133 + 13274190-13274317,13274533-13276371,13277064-132772... 29 2.8
12_02_1267 - 27448871-27450445 29 4.9
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 4.9
02_02_0450 - 10381360-10381391,10381737-10382283,10382770-103829... 29 4.9
07_01_0672 - 5041742-5043175 28 6.5
11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527 28 8.6
06_01_0441 + 3130906-3131424,3131847-3132269 28 8.6
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 28 8.6
>12_02_1269 + 27462644-27463612
Length = 322
Score = 32.3 bits (70), Expect = 0.40
Identities = 29/87 (33%), Positives = 40/87 (45%), Gaps = 6/87 (6%)
Frame = +3
Query: 246 VDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKL-CLNCGVPGLG-----TAMHMELPGG 407
+D K E+ID +RD EYY ++ K WK L G PG G AM L G
Sbjct: 189 MDPVRKQEIID--DLDMFRDGKEYYASVGKAWKRGYLLFGPPGTGKSTMIAAMANFLDYG 246
Query: 408 EASMHLSVIPPDYLVTRLSIIDVTGLS 488
+ L+ + + + RL I+ TG S
Sbjct: 247 VYDLELTAVKSNTELRRL-FIETTGKS 272
>12_02_0291 + 16951154-16952740
Length = 528
Score = 31.5 bits (68), Expect = 0.70
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 246 VDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKL-CLNCGVPGLG 377
+D A+K+E++D TT++ EY+ + K WK L G PG G
Sbjct: 213 MDHAKKVEIVD--DLTTFQKGKEYHSKVGKAWKRGYLLHGPPGTG 255
>04_03_0850 -
20269047-20270595,20270708-20270751,20271248-20271329,
20274027-20274115
Length = 587
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 333 KRWKLCLNCGVPGLGTAMHMELPGGEASMHLSVIPPDYLVTRLSII 470
K +KL G +GT EL G E L V+ +YL++R ++
Sbjct: 479 KNFKLLKQLGCGDIGTVYLAELVGSECMFALKVMDIEYLISRKKML 524
>11_04_0131 + 13792531-13792632,13795943-13796110
Length = 89
Score = 29.5 bits (63), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 391 WSFQGVKPPCIFPSYLQTIWLQDYL*STL 477
W+ GV+ C+ P Y++T L DY+ S +
Sbjct: 12 WASDGVRVNCVAPGYIKTPLLADYVASEI 40
>10_07_0133 +
13274190-13274317,13274533-13276371,13277064-13277253,
13277442-13277657
Length = 790
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/76 (25%), Positives = 39/76 (51%)
Frame = +3
Query: 138 VQNSS*KMRKLNEKIAFFYLVSLNTVFAESKKRYVNVDDAEKIEVIDLTQATTWRDLSEY 317
++ S+ +K+++ A + VSL ++ SK+ + + D E + + L+ W L Y
Sbjct: 551 IETSTCFEQKMHQIRALIFHVSLTSL--ASKESNLVICDPESLSIW-LSYVDLWGMLLNY 607
Query: 318 YEAIEKRWKLCLNCGV 365
Y I ++W + + C V
Sbjct: 608 YPTIVEKWNMRIICMV 623
>12_02_1267 - 27448871-27450445
Length = 524
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +3
Query: 246 VDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKL-CLNCGVPGLG 377
++ A+K ++D T +RD +YY + K WK L G PG G
Sbjct: 214 MEPADKDAILD--DLTAFRDSKDYYAKVGKAWKRGYLLHGPPGTG 256
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 431 DGKMHGGFTPWKLHVHSCTQPWYAAVQTQLPSFFNRLIV 315
D HGGF+ + H C P Y SFF+RLIV
Sbjct: 156 DTSTHGGFSVLRRHADECLPPLY--------SFFDRLIV 186
>02_02_0450 -
10381360-10381391,10381737-10382283,10382770-10382952,
10383123-10383863
Length = 500
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +3
Query: 195 LVSLNTVFAESKKRYVNVDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKLCLNCGV 365
LVSL ++ SK+ + + D E + V L+ W L YY I ++W + + C V
Sbjct: 308 LVSLTSL--ASKESNLVISDPESLSVW-LSSIDLWGMLLNYYPTIVEKWNMRIICMV 361
>07_01_0672 - 5041742-5043175
Length = 477
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = +3
Query: 246 VDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKL-CLNCGVPGLG 377
+D A+K +++D A +RD +YY I K WK L G PG G
Sbjct: 214 MDPAKKKDIMDDLDA--FRDGKDYYARIGKAWKRGYLLHGPPGTG 256
>11_04_0235 - 15209003-15211187,15212242-15212319,15212743-15213527
Length = 1015
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/56 (26%), Positives = 30/56 (53%)
Frame = +3
Query: 138 VQNSS*KMRKLNEKIAFFYLVSLNTVFAESKKRYVNVDDAEKIEVIDLTQATTWRD 305
VQ++S + ++N I ++ SL T+F E++ + E + V+DL + +D
Sbjct: 544 VQHNSTRRGRMNSDIDLSHVRSL-TIFGEAEDSVLEFSSYELLRVLDLEECENLKD 598
>06_01_0441 + 3130906-3131424,3131847-3132269
Length = 313
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 345 LCLNCGVPGLGTAMHMELPGGEASMHLSVIPPDYL 449
+C+ G G T + +LP A+M + V+PP+ L
Sbjct: 226 MCVRAGTYGRLTPLVTDLPRNNATMVIFVLPPESL 260
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 27.9 bits (59), Expect = 8.6
Identities = 20/64 (31%), Positives = 26/64 (40%)
Frame = -2
Query: 526 ATSKVSTKGGFVLLRPVTSIIDNLVTR*SGGMTERCMEASPPGSSMCIAVPSPGTPQFRH 347
A ++ S+ G VL PV++ D S TERC S G MC G +
Sbjct: 282 ACARCSSTGTLVLTEPVSTFSDGDQPL-STPRTERCPNCSGAGKVMCPTCLCTGMAMANN 340
Query: 346 SFHR 335
S R
Sbjct: 341 SIDR 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,330,237
Number of Sequences: 37544
Number of extensions: 343987
Number of successful extensions: 940
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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