Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2e08
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    29   0.044
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    25   0.55 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           25   0.55 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.7  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 29.1 bits (62), Expect = 0.044
 Identities = 22/93 (23%), Positives = 39/93 (41%)
 Frame = +3

Query: 243 NVDDAEKIEVIDLTQATTWRDLSEYYEAIEKRWKLCLNCGVPGLGTAMHMELPGGEASMH 422
           N  D+     +    AT   D +  YEA+   +   +N    G+G  + +      AS+ 
Sbjct: 378 NKIDSRVTRFVVAVGATVNMDGTALYEAVAAIFIAQMNGISLGIGEVITVSFTATLASIG 437

Query: 423 LSVIPPDYLVTRLSIIDVTGLSNTNPPLVLTLD 521
            + IP   L+T L ++   GL   +  L+  +D
Sbjct: 438 AASIPSAALITMLIVLTALGLPTNDISLLFAVD 470


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = +3

Query: 165 KLNEKIAFFYLV------SLNTVFAESKKRY--VNVDDAEKIEVIDLTQATTWRDLSEYY 320
           K+N +  +FY        S++ + + +  +Y   + DDA  +       +TT  +  +  
Sbjct: 430 KVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQ 489

Query: 321 EAIEKRWKLCLNCGVPGLGTAMHMELPGGEASMH 422
           + +   W   +N GVP + +     L   E S+H
Sbjct: 490 KVLIDFWVSFVNNGVPNVNSVQWPRLNPNEKSLH 523


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 8/94 (8%)
 Frame = +3

Query: 165 KLNEKIAFFYLV------SLNTVFAESKKRY--VNVDDAEKIEVIDLTQATTWRDLSEYY 320
           K+N +  +FY        S++ + + +  +Y   + DDA  +       +TT  +  +  
Sbjct: 430 KVNRQPVWFYYYTYKGAHSISEIMSGTSNKYGVCHADDAYMVVDTPFLASTTTTNDIKMQ 489

Query: 321 EAIEKRWKLCLNCGVPGLGTAMHMELPGGEASMH 422
           + +   W   +N GVP + +     L   E S+H
Sbjct: 490 KVLIDFWVSFVNNGVPNVNSVQWPRLNPNEKSLH 523


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 305 IPPSRCLC*VDHFDFLCVIYIYIA 234
           +PP   L  VD F  +C +++++A
Sbjct: 298 LPPVSYLKAVDAFMSVCTVFVFMA 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,351
Number of Sequences: 438
Number of extensions: 3908
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)