Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d24
         (566 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0238 - 26621843-26622457,26622625-26623375,26624372-266244...    28   4.5  
04_03_0677 - 18600568-18600609,18601241-18601307,18601511-186015...    28   4.5  

>05_06_0238 -
           26621843-26622457,26622625-26623375,26624372-26624418,
           26624632-26624740,26624969-26625050,26625164-26625248,
           26625320-26625439,26625735-26625800,26625994-26626041,
           26626148-26626196,26626576-26626613
          Length = 669

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +2

Query: 230 PYKEARALFSP*NIMKKIPLLHW 298
           PY+EAR LF   N+   IP L W
Sbjct: 171 PYQEARRLFKEPNVTLDIPELKW 193


>04_03_0677 -
           18600568-18600609,18601241-18601307,18601511-18601596,
           18602411-18602471,18602472-18602573,18602646-18602750,
           18604031-18604109,18604804-18604963
          Length = 233

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -2

Query: 412 FMICY-NYSFVNVDLEINTSPRYKISINIQNWFSRTLDYPMQQRNFFHYV 266
           F+I Y N S   +  +I  SPR  I  ++ NW     D P+ +  F+ +V
Sbjct: 72  FLILYANMSLAGIHGDIYASPRDHICASLHNWALPIAD-PLFKTRFYSFV 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,473,857
Number of Sequences: 37544
Number of extensions: 188702
Number of successful extensions: 296
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 296
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)