Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d23
         (671 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    27   0.71 
CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein...    25   2.9  
AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical prote...    24   5.0  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 396 KVSVERYTE---SQKDQENSGQSDTDSFVKVECTTGLTNERSK 515
           K  +++Y E   +++ +E++ ++  D F KV+     TNER K
Sbjct: 358 KEEIKQYDELVSAKESKESTLKNSLDKFAKVQANMRATNERRK 400


>CR954257-11|CAJ14162.1|  415|Anopheles gambiae predicted protein
           protein.
          Length = 415

 Score = 24.6 bits (51), Expect = 2.9
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 327 CQCCSKLFSTKNSYNNHLNSKKHKVSV 407
           C  C KLFS +  Y  H+ +   K  V
Sbjct: 383 CTICHKLFSQRQDYQLHMRAIHPKPGV 409


>AJ297931-1|CAC35451.1|  166|Anopheles gambiae hypothetical protein
           protein.
          Length = 166

 Score = 23.8 bits (49), Expect = 5.0
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 546 EDIETDSEIEELDSDEWDECRIQESDSLIKPR 641
           E+ E ++E +E ++DE +    +ESD L + R
Sbjct: 82  EEQEEEAEADEEEADESESEESEESDELEEAR 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,233
Number of Sequences: 2352
Number of extensions: 10784
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 67322955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)