Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d18
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch...   105   8e-24
SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...    27   2.5  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    27   3.3  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    26   4.4  
SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|...    25   7.6  

>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
           Mud1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score =  105 bits (251), Expect = 8e-24
 Identities = 58/144 (40%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
 Frame = +2

Query: 257 PRIIREMFLANPDQLALLKQNNPRLADALLTGSL--DTFAAVLREQILA--RTERQQQRI 424
           P  IR+  LA P  L  ++   P+LA  L   +    T+ ++   Q+L    +       
Sbjct: 6   PENIRQTILATPFLLNRIRTEFPQLAAVLNDPNAFATTWQSINASQLLQIPSSTYSMGMP 65

Query: 425 RMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF 604
                D FD E QR I E+IRQ  +  NM++A+E +PE FG V ML++N  +NG  VKAF
Sbjct: 66  SFSEDDLFDVEVQRRIEEQIRQNAVTENMQSAIENHPEVFGQVYMLFVNVEINGHKVKAF 125

Query: 605 IDSGAQTTIMSAACAERCNIMRLV 676
           +DSGAQ TI+SA CAE+C + RL+
Sbjct: 126 VDSGAQATILSADCAEKCGLTRLL 149


>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = +2

Query: 137 ELPFTALPSGIASLDFSNIQVPTTSANTSMASR--NTPVEEDPRII 268
           ++ F  LP    S   SN  +PTT  NTS A    N+     PR++
Sbjct: 287 QIQFRDLPGAHPSPTPSNAGIPTTLTNTSSAPNFANSTFRFPPRVV 332


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = -2

Query: 559 HYNCSKSLWIIFHCSLHVGFYIFLPNFFSNHPLCFCVEWVRVHHPYSL 416
           HY     +W +   S HVG+        + H +  C ++  +H P SL
Sbjct: 168 HYAVLAQIWNLAD-SAHVGYLEMYQYVIARHLVAICKQYNLIHLPRSL 214


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 491 KNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQ 622
           K I++     +EY P+TF T   LY N + N F +     S AQ
Sbjct: 92  KGIQSKWYGYIEYLPKTFNT--PLYFNENDNAFLISTNAYSAAQ 133


>SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1184

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 380 REQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANME 514
           R+Q + R+  Q+   R  + DPF T    + A     +N  AN++
Sbjct: 589 RQQTMTRSTYQESSQRPFHEDPFRTHPGLLQAVARNHRNSLANID 633


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,879,748
Number of Sequences: 5004
Number of extensions: 60522
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)