Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d18
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0742 + 5524149-5524214,5524609-5524641,5524750-5524880,552...   138   5e-33
01_05_0315 + 20803035-20803154,20803235-20804089,20804171-208043...    29   3.4  
05_07_0128 + 27879969-27880143,27880232-27881323,27883562-278836...    29   4.5  
08_02_0678 - 19971416-19971930,19971970-19973347,19974122-199745...    28   6.0  

>02_01_0742 +
           5524149-5524214,5524609-5524641,5524750-5524880,
           5525174-5525282,5525406-5525522,5525896-5525961,
           5526314-5526376,5526459-5526503,5526690-5526751,
           5526974-5527067,5527375-5527467,5527561-5527630,
           5527816-5527892,5527976-5528033,5528135-5528166,
           5528245-5528376
          Length = 415

 Score =  138 bits (333), Expect = 5e-33
 Identities = 66/144 (45%), Positives = 95/144 (65%), Gaps = 3/144 (2%)
 Frame = +2

Query: 254 DPRIIREMFLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTE---RQQQRI 424
           DP+  R+    +   +  L QN+P LA A+L   ++     LR +   R E   +Q++ +
Sbjct: 93  DPQAFRQHIRGDSQLMGQLLQNDPALAQAILGDDINELQNTLRSRHQQRLELKRKQEEEL 152

Query: 425 RMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAF 604
            +M +DPFD EAQ+ I   IRQK I+ N EAA+E+NPE F  VVMLY++  VNG P+KAF
Sbjct: 153 ALMYADPFDVEAQKKIEAAIRQKGIDENWEAALEHNPEAFARVVMLYVDMEVNGVPLKAF 212

Query: 605 IDSGAQTTIMSAACAERCNIMRLV 676
           +DSGAQ+TI+S +CAERC ++RL+
Sbjct: 213 VDSGAQSTIISKSCAERCGLLRLL 236


>01_05_0315 +
           20803035-20803154,20803235-20804089,20804171-20804350,
           20805191-20805286,20805895-20806179
          Length = 511

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/37 (32%), Positives = 24/37 (64%)
 Frame = +2

Query: 107 TIASYVSCNIELPFTALPSGIASLDFSNIQVPTTSAN 217
           +IAS++  N+E  FT LP+G+  ++  +++V   + N
Sbjct: 290 SIASHIEDNLEYVFTGLPNGLPHVERLHVKVFVRTQN 326


>05_07_0128 +
           27879969-27880143,27880232-27881323,27883562-27883698,
           27884179-27884409,27884707-27884730
          Length = 552

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 86  PVRNWPKTIASYVSCNIELPFTALPSGIASLDFSNIQVPTTSANT 220
           P R+WP    S ++CNI+       +G  S   S +  P T+A T
Sbjct: 4   PNRHWPSMFRSNLACNIQQQQQPDMNGNGSSSSSFLLSPPTAATT 48


>08_02_0678 -
           19971416-19971930,19971970-19973347,19974122-19974518,
           19974533-19974645,19977436-19977903,19977935-19978059,
           19978192-19978452,19984254-19984647
          Length = 1216

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 560 LYINCHVNGFPV-KAFIDSGAQTTIMSAA 643
           LYIN +VNG P+ K  +D GA   +M  A
Sbjct: 150 LYINGYVNGKPMSKMMVDGGAAVNLMPYA 178


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,297,446
Number of Sequences: 37544
Number of extensions: 344804
Number of successful extensions: 840
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 819
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)