Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d18
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59132| Best HMM Match : No HMM Matches (HMM E-Value=.)             156   2e-38
SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)             152   3e-37
SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.86 
SB_59365| Best HMM Match : VWA (HMM E-Value=0)                         30   2.0  
SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_33075| Best HMM Match : Big_2 (HMM E-Value=1.7)                     29   4.6  
SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_59132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score =  156 bits (378), Expect = 2e-38
 Identities = 74/118 (62%), Positives = 91/118 (77%)
 Frame = +2

Query: 275 MFLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDT 454
           MFL +P Q++LLK+ NP LADAL++G+L  FA VL +Q   R ER+ +RIR MN+D FD 
Sbjct: 1   MFLNDPHQMSLLKERNPELADALISGNLQKFADVLNKQRQERAERELRRIRTMNADMFDA 60

Query: 455 EAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTT 628
           EAQR IAEEIR  NI  NME AMEY+PE+F  V+MLYIN  +NG+PVKAF+DSGAQ T
Sbjct: 61  EAQREIAEEIRMSNINQNMETAMEYSPESFAKVIMLYINIKLNGYPVKAFVDSGAQMT 118


>SB_1967| Best HMM Match : ubiquitin (HMM E-Value=4.7e-12)
          Length = 348

 Score =  152 bits (368), Expect = 3e-37
 Identities = 89/181 (49%), Positives = 111/181 (61%), Gaps = 6/181 (3%)
 Frame = +2

Query: 152 ALPSGIA-SLDFSNIQVP-TTSANTSMASRNTPV----EEDPRIIREMFLANPDQLALLK 313
           A PSG   ++D+  IQ+P    + T  A    P     +E P  IR+MFL +P Q+    
Sbjct: 84  APPSGQPMAIDWGQIQLPGNNQSRTQPAPSTAPPPAANQESPEYIRDMFLNDPHQICF-- 141

Query: 314 QNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQK 493
             N R         L  FA VL +Q   R ER+ +RIR MN+D FD EAQR IAEEIR  
Sbjct: 142 --NQR--------ELQKFADVLNKQRQERAERELRRIRTMNADMFDAEAQREIAEEIRMS 191

Query: 494 NIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSAACAERCNIMRL 673
           NI  NME AMEY+PE+F  V+MLYIN  +NG+PVKAF+DSGAQ T MS+ACA R +I RL
Sbjct: 192 NINQNMETAMEYSPESFAKVIMLYINIKLNGYPVKAFVDSGAQMTFMSSACASRLHIERL 251

Query: 674 V 676
           +
Sbjct: 252 I 252


>SB_5351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +2

Query: 374 VLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAME 526
           + RE+ L     ++QRI+M      + E  R   EE+R++N E  M+AA E
Sbjct: 435 IKREEELEEQRLEEQRIKMQKEFEEEQEKARRKEEEVRKRNEE--MKAAQE 483


>SB_59365| Best HMM Match : VWA (HMM E-Value=0)
          Length = 664

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 29/122 (23%), Positives = 52/122 (42%)
 Frame = +2

Query: 194 QVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPRLADALLTGSLDTFAA 373
           + P T+++     +  P+   PR    M L    Q+ L  +N+      ++T S    + 
Sbjct: 433 KTPPTASDLKRYLQGAPLNT-PRASLAMALETGKQMFLNSRNDASKVLVVITDSKSVSSK 491

Query: 374 VLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTV 553
              E+  A  E    R+  +    FD E + + + +   KN   + +A  + NPET G V
Sbjct: 492 SEVEEAAALLEMAGIRVIPVGLGFFDKELEMITSNK---KN---SFQADQKVNPETLGHV 545

Query: 554 VM 559
           +M
Sbjct: 546 IM 547


>SB_28909| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 786

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 182 FSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPRLADALL 346
           +SN QV  TS  ++     T ++ +P++ R    +NP        +NP++  A L
Sbjct: 712 YSNPQVTRTSLYSNPQVTRTSLDSNPQVTRASLYSNPQVTRTSLDSNPQVTRASL 766



 Score = 28.3 bits (60), Expect = 6.0
 Identities = 34/156 (21%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
 Frame = +2

Query: 170  ASLDFSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPRLADALLT 349
            ASL +SN QV  TS +++       +  +P++ R    +NP        +NP++      
Sbjct: 621  ASL-YSNPQVTRTSLDSNPQVTRNSLYSNPQVTRTSLYSNPQVTRTSLYSNPQVTRT--- 676

Query: 350  GSLDTFAAVLREQILARTERQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANME---AA 520
             SLD+   V R  + +  +  +  + +   +P  T        ++ + ++ +N +    +
Sbjct: 677  -SLDSNPQVTRASLYSNPQVTRNSLYL---NPQVTRTSLYSNPQVTRTSLYSNPQVTRTS 732

Query: 521  MEYNPETFGTVVMLYINCHVNGFPVKAFIDSGAQTT 628
            ++ NP+   T   LY N  V     +  +DS  Q T
Sbjct: 733  LDSNPQV--TRASLYSNPQV----TRTSLDSNPQVT 762


>SB_33075| Best HMM Match : Big_2 (HMM E-Value=1.7)
          Length = 334

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 2/123 (1%)
 Frame = +2

Query: 182 FSNIQVPTTSANTSMASRNTPVEEDPRIIREMFLANPDQLALLKQNNPRLADALLTGSLD 361
           F+  + P+T+++ + + RN   E+   +IR   +       +   ++      LL G +D
Sbjct: 43  FTRRKTPSTTSSLASSKRNNGKEKTNEVIRPPSVKRRGTPEIFPMSSEMKKTLLLLGKMD 102

Query: 362 TFAAVLREQILARTE--RQQQRIRMMNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNP 535
                  ++  + T   RQ+ R+R++N   F    + M + +     +  N    +E   
Sbjct: 103 LLPEEEEKKHKSATTKFRQKTRMRVINPQRF---IRSMKSSDNNNNAVTRNSSEKIEEES 159

Query: 536 ETF 544
           E F
Sbjct: 160 ENF 162


>SB_17433| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1924

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
 Frame = +2

Query: 95   NWPKTIASYVSCNIELPFTALPSGIASLDF----SNIQVPTTSANTSMASRNTPVEEDPR 262
            NW   +   +  N+ L    LPS +A   F     NI      A+       TP      
Sbjct: 919  NWSAAVKKRLQKNVYLVCCKLPSKVARCSFRGNSKNISYVKPIASEKPKEEATPTRTTKS 978

Query: 263  IIREMFLANPD 295
            I+ E  LAN +
Sbjct: 979  ILEEKVLANEE 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,441,528
Number of Sequences: 59808
Number of extensions: 411854
Number of successful extensions: 1139
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)