Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d18
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    25   0.88 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.5  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.7  
DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    22   6.2  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.6 bits (51), Expect = 0.88
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = +2

Query: 623 TTIMSAACAERCN 661
           TTI+S A AERCN
Sbjct: 132 TTIVSGAMAERCN 144


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +2

Query: 521 MEYNPETFGTVVMLYI 568
           +++NPE +G V MLY+
Sbjct: 95  LKWNPEEYGGVEMLYV 110


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 497  IEANMEAAMEYNPETF--GTVVMLYINCHVNGFPVKAFIDSG 616
            ++A+M A   +N        +  LY++  V GF  K  ++ G
Sbjct: 1024 LQADMNALKNFNQPLLVNDQLGQLYLDLEVEGFETKLVLEDG 1065


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +2

Query: 95   NWPKTIASYVSCNIELPFTALPSGIASLDFSNIQVPTTSANTSMASRNTPVEEDPRI 265
            N P T    +S    +P T+LP+   S++   ++    +   +  + NTP ++   I
Sbjct: 840  NTPTTSVISMS-GTTVPITSLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNI 895



 Score = 21.4 bits (43), Expect = 8.2
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 189 LLKSRLAMPLGKAVNGNSILHET 121
           L +S L  P  +  N NSI HE+
Sbjct: 206 LEQSPLCPPAPRLTNSNSIKHES 228


>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 10/52 (19%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 105 KQ*RHMFRVILNYHLQPCQVA*LALTSATSKYLQHQQIHQW---LRETRLLK 251
           K+ + +   +LN H   C    + + +    ++Q    ++W   LR  +++K
Sbjct: 51  KKIKELLPEVLNNHCNRCTSRQIGIANTLIPFMQQNYPYEWQLILRRYKIMK 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,153
Number of Sequences: 438
Number of extensions: 4193
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)