Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d16
         (294 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    25   1.8  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    25   2.3  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   3.1  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    25   3.1  
SPBC2D10.11c |||nucleosome assembly protein Nap2 |Schizosaccharo...    24   4.0  
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.3  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    24   5.3  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    23   7.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     23   7.1  
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    23   9.3  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    23   9.3  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    23   9.3  

>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +3

Query: 135 GNWSEERLKNEECGVT 182
           GNWS +R K E  GVT
Sbjct: 451 GNWSLKRFKMERAGVT 466


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +3

Query: 138 NWSEERLKNEECGVTCRNYIDVHKRY 215
           +W E +L  E+   T   YI+ H++Y
Sbjct: 668 SWQELQLAMEKPNATLDTYIEAHEKY 693


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 293 FFFHCMNLIFLFSFHIADQSENV 225
           +FF+ + +IF F    AD+SE V
Sbjct: 270 WFFYMLTIIFFFKEVTADKSEKV 292


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -2

Query: 191 IAACHATLLILQSFLAPISNENRITVIH 108
           +A C ATL+IL  F  P+++    T ++
Sbjct: 194 LAGCVATLIILACFEKPLNDRGEYTKLN 221


>SPBC2D10.11c |||nucleosome assembly protein Nap2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 379

 Score = 24.2 bits (50), Expect = 4.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 293 FFFHCMNLIFLFSFHIADQSENVLR 219
           F+  C++ +FL    I  + ENVLR
Sbjct: 169 FWLTCLHNVFLVGEMITPEDENVLR 193


>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1073

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 66  TFNIKLNRI---KRLFIMNYSNSVLIG 137
           TF+ KLN     KRL +  Y+N+++IG
Sbjct: 746 TFSSKLNLAATPKRLLVDKYTNTLIIG 772


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 5.3
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 182 CHATLLILQSFLAPISNENRITVIHYK 102
           CH  L +L+  L P +      V +YK
Sbjct: 98  CHDVLSVLEKHLIPAATTGESKVFYYK 124


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 57  CLNTFNIKLNRIKRLFIMNYSNSVLIGN 140
           CL+T     + +KR+ I  YS S L+ +
Sbjct: 115 CLSTIGEHTDYVKRVSIPKYSKSPLVAS 142


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr
          2|||Manual
          Length = 815

 Score = 23.4 bits (48), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -3

Query: 73 LNVFKQIYFFPIWLFVVV 20
          L VF   YFFP+ +F+ +
Sbjct: 5  LEVFVYFYFFPLLVFITL 22


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 53  YLFKHV*HKIKSNKTSFYNELQ*FGSHWKLERGKTEE*GVWR 178
           YL KH    ++S    F   L    S WK++ G  ++  VWR
Sbjct: 514 YLEKHADSLLQSVLVQFSLIL----SPWKIKNGSIDDFSVWR 551


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 48  KYICLNTFNIKLNRIKRLFIMNYSNSVLIGNWSEER-LKNEECGVTCRNYIDVHKRYTAE 224
           K + L   N+ +  +  L    +S    I  +   R LK++ CG+    ++ +   YT+ 
Sbjct: 107 KVLHLLRINVNIRDVCVLLAPAFSGITAIATYYLARELKSDACGLLAAAFMGIAPGYTSR 166

Query: 225 NI 230
           ++
Sbjct: 167 SV 168


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 23.0 bits (47), Expect = 9.3
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -2

Query: 200 IYVIAACHATLLILQSFLAPISNENRITVIH 108
           +Y+I    A  L +++F  PIS  N++   H
Sbjct: 252 LYMIKVLSAPCLYIETFSFPISTINQLFKAH 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,065,881
Number of Sequences: 5004
Number of extensions: 18972
Number of successful extensions: 47
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 71828050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)