Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2d16
(294 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0067 - 3812508-3813158,3813944-3814030,3814124-3814312,381... 27 2.0
04_04_0923 + 29441740-29441980,29442321-29442401,29442630-294427... 27 2.0
06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482 27 2.6
06_01_0618 - 4492057-4492590,4492780-4493192,4493714-4494026,449... 27 2.6
06_01_0617 - 4483517-4483978,4484093-4484490,4484814-4484898,448... 27 3.5
11_06_0395 + 23088737-23088823,23090198-23090346,23090570-230907... 26 4.6
03_05_0496 - 24920645-24920655,24921388-24921547,24921788-249218... 26 6.1
02_03_0272 - 17146578-17146691,17146806-17146926,17147260-171473... 26 6.1
12_01_1107 - 11702087-11702560 25 8.0
11_06_0192 + 21128298-21128829,21129341-21129407,21131169-211312... 25 8.0
09_04_0209 - 15638246-15639214 25 8.0
08_02_0120 + 12788510-12788680,12788908-12789342 25 8.0
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970... 25 8.0
01_06_1714 - 39368509-39369153,39369607-39369850,39369995-393701... 25 8.0
>09_02_0067 -
3812508-3813158,3813944-3814030,3814124-3814312,
3814475-3814603,3814917-3815003,3815126-3815563
Length = 526
Score = 27.5 bits (58), Expect = 2.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 159 KNEECGVTCRNYIDVHKRYTAENIFTLVSDVET 257
KNE G+ +N ++ HK T+E + + VET
Sbjct: 441 KNEFSGLVLQNDLEGHKTITSEKVIVELFQVET 473
>04_04_0923 +
29441740-29441980,29442321-29442401,29442630-29442719,
29443123-29443203,29443721-29443774,29444062-29444111,
29444542-29444623,29444734-29444838,29445514-29445641,
29445726-29445797,29445887-29445937,29446029-29446100,
29446201-29446278,29446446-29447270,29447648-29448556
Length = 972
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = +3
Query: 15 LLTTTNNQIGKKYICLNTFNIKLNRIKRLFIMNYSNSVLIGNWS 146
L+ +N++ ++ I +N N+KLNR K Y+N L WS
Sbjct: 259 LILGISNELSQEEISIND-NMKLNREKTNSSDEYNNCTLHDEWS 301
>06_01_0621 - 4511583-4512116,4512307-4512719,4513236-4513482
Length = 397
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 260 FSFHIADQSENVLRRVPFMNIYVIAACHATLLILQSFLAPISN 132
F+F S + + P I V+ C L+++QS+ A +S+
Sbjct: 73 FAFSTLTFSHGQIIKSPLSKIVVVIWCFVVLILVQSYTASLSS 115
>06_01_0618 -
4492057-4492590,4492780-4493192,4493714-4494026,
4495257-4495828,4498324-4498600
Length = 702
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 260 FSFHIADQSENVLRRVPFMNIYVIAACHATLLILQSFLAPISN 132
F+F S + + P I V+ C L+++QS+ A +S+
Sbjct: 378 FAFSTLTFSHGQIIKSPLSKIVVVIWCFVVLILVQSYTASLSS 420
>06_01_0617 -
4483517-4483978,4484093-4484490,4484814-4484898,
4485002-4485838
Length = 593
Score = 26.6 bits (56), Expect = 3.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -2
Query: 239 QSENVLRRVPFMNIYVIAACHATLLILQSFLAPISN 132
QS ++R P I V+ C A ++++QS+ A +S+
Sbjct: 306 QSGQIIRS-PMSKIVVVIWCFAVVILVQSYTASLSS 340
>11_06_0395 + 23088737-23088823,23090198-23090346,23090570-23090708,
23090795-23090889,23090967-23091080,23091674-23091803,
23091931-23092052,23092889-23093007,23093946-23094034,
23094072-23094245,23094310-23094616,23094726-23095180,
23095334-23096315,23096381-23097396,23097757-23097792,
23098065-23098130
Length = 1359
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = -1
Query: 198 LCNCGMSRHTPHSSVF 151
LCNCG R P S VF
Sbjct: 1195 LCNCGRVRSLPQSDVF 1210
>03_05_0496 -
24920645-24920655,24921388-24921547,24921788-24921828,
24922029-24922521,24923503-24923616,24925728-24925955,
24926405-24926650,24927690-24927831,24929263-24929354
Length = 508
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Frame = +3
Query: 81 LNRIKRLFIMNYSN---SVLIGNWSEERLKNEE 170
LN IKRLF+M S+ L+G +E+ +N E
Sbjct: 33 LNYIKRLFVMGISSKWFKSLVGIRKQEKARNAE 65
>02_03_0272 -
17146578-17146691,17146806-17146926,17147260-17147365,
17147469-17147551,17147688-17147815,17147897-17147983,
17148064-17148174,17148502-17148669,17148753-17148837,
17148921-17149037,17149127-17149203,17149299-17149370,
17150538-17150634,17150750-17150952,17151115-17151217,
17151324-17151391,17151461-17151514,17151595-17151704,
17151982-17152060,17152171-17152233,17153410-17153529,
17153913-17153969,17154071-17154187,17156426-17156476,
17156591-17156689,17156787-17156935,17158090-17158312
Length = 953
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 293 FFFHCMNLIFLFSFHIADQSENVLRRVPFMNIYVI 189
F F C N ++ I D N+L+RVP ++++
Sbjct: 794 FIFACFNQLYKMDPEIFDTWCNILKRVPNSALWLL 828
>12_01_1107 - 11702087-11702560
Length = 157
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 141 WSEERLKNEECGV 179
WSEERL+ +CG+
Sbjct: 49 WSEERLQTRQCGM 61
>11_06_0192 +
21128298-21128829,21129341-21129407,21131169-21131211,
21131301-21131367,21131613-21131770,21131863-21132057
Length = 353
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/51 (27%), Positives = 26/51 (50%)
Frame = -2
Query: 287 FHCMNLIFLFSFHIADQSENVLRRVPFMNIYVIAACHATLLILQSFLAPIS 135
+ C+ + +F + D ++ + R N YVIAA L ++ F+A +S
Sbjct: 302 YGCLATVLFSAFIVFDTNQLIKRHT--YNEYVIAAISLYLDVINLFMAQLS 350
>09_04_0209 - 15638246-15639214
Length = 322
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 141 WSEERLKNEECGV 179
WSEERL+ +CG+
Sbjct: 120 WSEERLQTRQCGM 132
>08_02_0120 + 12788510-12788680,12788908-12789342
Length = 201
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 141 WSEERLKNEECGV 179
WSEERL+ +CG+
Sbjct: 87 WSEERLQTRQCGM 99
>07_01_1078 -
9707125-9707640,9708091-9708306,9708312-9709685,
9709704-9710044,9710120-9710198
Length = 841
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 210 FYEHLCNCGMSRHTPHSSVFPRSNF 136
FY+ LCN G S VF + NF
Sbjct: 481 FYQALCNLGASVSVMPKDVFDKLNF 505
>01_06_1714 -
39368509-39369153,39369607-39369850,39369995-39370191,
39370607-39370708,39370826-39371026,39371138-39371381,
39371813-39371983,39372450-39372751
Length = 701
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 105 IMNYSNSVLIGNWSEERLKNEECGV 179
I++Y +GNWS +L++ E G+
Sbjct: 266 ILHYGLPFKVGNWSFSKLEHHEDGI 290
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,250,794
Number of Sequences: 37544
Number of extensions: 106106
Number of successful extensions: 275
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 275
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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