Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d16
         (294 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.5  
SB_20558| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.6  
SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)             26   4.6  
SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23)          26   6.0  
SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)             25   8.0  
SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.0  
SB_5212| Best HMM Match : SH3_1 (HMM E-Value=4.9e-20)                  25   8.0  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       25   8.0  

>SB_2139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 177 VTCRNYIDVHKRYTAENIFTLVSDVE 254
           ++C+ + DV K   AEN+  L+ D++
Sbjct: 259 LSCKAFEDVRKELVAENLMKLLEDIK 284


>SB_20558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
 Frame = +3

Query: 18  LTTTNNQIGKKYIC----LNTFNIKLNRIKRLFIMNYSN 122
           LTTT++ +G+K+IC    +         +KR+F +  +N
Sbjct: 26  LTTTDSSMGRKWICGYENIKELQAAPENVKRIFSLENAN 64


>SB_16501| Best HMM Match : Fork_head (HMM E-Value=3.3e-29)
          Length = 594

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/15 (66%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
 Frame = -1

Query: 228 CSPPCTFYEH-LCNC 187
           C PP TF EH  CNC
Sbjct: 118 CHPPATFVEHGHCNC 132


>SB_51390| Best HMM Match : Galactosyl_T (HMM E-Value=2.9e-23)
          Length = 367

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +3

Query: 99  LFIMNYSNSVLIGNWSEERLKNEEC---GVTCRNYIDVHKRY 215
           LFI + S+ VL   ++EE+LK+  C    +  ++   +H+RY
Sbjct: 315 LFIYDGSHGVLALEYTEEKLKHAVCIGERLQAKHIQQLHERY 356


>SB_55426| Best HMM Match : SH3_1 (HMM E-Value=1.90002e-41)
          Length = 689

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 48  KYICLNTFNIKLNRIKRLFI-MNYSNSVLIGNWSEERLKNEEC 173
           K +C +  NI+   +  ++  +NY N+++  N  +   +N+EC
Sbjct: 489 KRLCYSLENIQERALSVIYPNLNYENALVQANLQDLESRNDEC 531


>SB_35782| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 141 WSEERLKNEECGVTCRNYIDV 203
           WS +RLK E CG+  R++  V
Sbjct: 630 WSMDRLKCETCGLRKRSFTTV 650


>SB_5212| Best HMM Match : SH3_1 (HMM E-Value=4.9e-20)
          Length = 300

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 48  KYICLNTFNIKLNRIKRLFI-MNYSNSVLIGNWSEERLKNEEC 173
           K +C +  NI+   +  ++  +NY N+++  N  +   +N+EC
Sbjct: 123 KRLCYSLENIQERALSVIYPNLNYENALVQANLQDLESRNDEC 165


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +3

Query: 93  KRLFIMNYSNSVLIGNWSEERLKNEECGVT 182
           K L I NY  SV     SEE+   E+ G T
Sbjct: 789 KELMIDNYQKSVARAKASEEKPNTEQMGCT 818


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,570,687
Number of Sequences: 59808
Number of extensions: 131443
Number of successful extensions: 272
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 16,821,457
effective HSP length: 71
effective length of database: 12,575,089
effective search space used: 326952314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)