Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d16
         (294 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    29   0.44 
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       29   0.44 
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       29   0.44 
AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic mul...    29   0.44 
AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell...    29   0.44 
U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical pr...    29   0.76 
AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine re...    27   1.8  
U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z74030-14|CAA98442.1|  198|Caenorhabditis elegans Hypothetical p...    27   3.1  
X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin pr...    26   4.1  
AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igca...    26   4.1  
AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical ...    26   5.4  
Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei...    25   9.4  

>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 102 FIMNYSNSVLIGNWSEERLKNEECGVTCRNYIDVHKRYTAENIF 233
           F MNY N  + G W ++R   +   +TCR +     R  + NIF
Sbjct: 397 FDMNYRNQCMNGQW-QQRYYFDHASLTCRQFWFDGCRSDSRNIF 439


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 102 FIMNYSNSVLIGNWSEERLKNEECGVTCRNYIDVHKRYTAENIF 233
           F MNY N  + G W ++R   +   +TCR +     R  + NIF
Sbjct: 397 FDMNYRNQCMNGQW-QQRYYFDHASLTCRQFWFDGCRSDSRNIF 439


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 102 FIMNYSNSVLIGNWSEERLKNEECGVTCRNYIDVHKRYTAENIF 233
           F MNY N  + G W ++R   +   +TCR +     R  + NIF
Sbjct: 397 FDMNYRNQCMNGQW-QQRYYFDHASLTCRQFWFDGCRSDSRNIF 439


>AF116529-1|AAD05570.1|  961|Caenorhabditis elegans synthetic
           multivulva protein LIN-35 Rb protein.
          Length = 961

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 80  IKSNKTSFYNELQ*FGSHWKLERGKTEE-*GVWRDMP 187
           ++SN  S YN L      WKLE  K EE  G   D P
Sbjct: 498 LESNNQSLYNRLTKIIGSWKLENSKLEEVCGTMSDSP 534


>AF000195-1|AAC24266.2|  961|Caenorhabditis elegans Abnormal cell
           lineage protein 35 protein.
          Length = 961

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +2

Query: 80  IKSNKTSFYNELQ*FGSHWKLERGKTEE-*GVWRDMP 187
           ++SN  S YN L      WKLE  K EE  G   D P
Sbjct: 498 LESNNQSLYNRLTKIIGSWKLENSKLEEVCGTMSDSP 534


>U51993-3|AAB36853.2|  958|Caenorhabditis elegans Hypothetical
           protein F56F10.4 protein.
          Length = 958

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +3

Query: 57  CLNTFNIKLNRIKRLFIMNYSNSVLIG-NWSEERLKNEECGVTCRN 191
           C+  FN +   + +  + NY +  +   +WS E+ KN   G++C N
Sbjct: 201 CVGVFN-ESQFVMKTSLRNYEDEAIQKLHWSSEKKKNVAFGISCNN 245


>AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein31 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 13/56 (23%), Positives = 26/56 (46%)
 Frame = -2

Query: 278 MNLIFLFSFHIADQSENVLRRVPFMNIYVIAACHATLLILQSFLAPISNENRITVI 111
           + + F    H   +      +VP+  IYV+  C++ ++ L  +   IS E +  +I
Sbjct: 110 LTICFFRKHHAIMKLRPTTDKVPYPIIYVLCMCYSIVITLSCYSIRISKEEQWQLI 165


>U41275-3|AAA82466.1|  612|Caenorhabditis elegans Hypothetical
           protein T25D1.1 protein.
          Length = 612

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = +3

Query: 48  KYICLNTFNIKLNRIKRLFIMNY--SNSVLIGNWSEERLKNEECGVTCR 188
           K + +   + KLNRI+  +      + S   G W +  LK E CG   R
Sbjct: 444 KNLLVEVMHNKLNRIRNRYNQEKGANKSEEAGKWMQMELKKENCGELVR 492


>Z74030-14|CAA98442.1|  198|Caenorhabditis elegans Hypothetical
           protein D1054.3 protein.
          Length = 198

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 69  FNIKLNRIKRLFIMNYSNS---VLIGNWSEERLKNEEC-GVTCRNYIDVHK 209
           +N   + ++R  + +YS S   VL  NWSE   K  EC    C  Y +  K
Sbjct: 148 YNDASDDVRRAMMKSYSESNGTVLSTNWSEIGQKKTECQPPACMEYKEYEK 198


>X56212-1|CAA39669.1| 1613|Caenorhabditis elegans vitellogenin
            protein.
          Length = 1613

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +3

Query: 159  KNEECGVTCRNYIDVHKR-YTAENIFTLVSDVE 254
            KN+ CG+   N  +VH+R YT++N  T   D+E
Sbjct: 1433 KNQLCGLCGNNDDEVHQRVYTSDN--TETEDIE 1463


>AC024778-2|AAF60566.2| 2325|Caenorhabditis elegans Neuronal igcam
            protein 4 protein.
          Length = 2325

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = +3

Query: 102  FIMNYSNSVLIGNWSEERLKNEECGVTCRNYIDVH 206
            +I+NY      G   +E  KNE+   T RNY D H
Sbjct: 1807 YIVNYK-----GYRMQEEFKNEDQQRTSRNYFDTH 1836


>AF043700-3|AAB97572.3|  200|Caenorhabditis elegans Hypothetical
           protein K09H9.8 protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -2

Query: 263 LFSFHIADQSENVLRRVPFMNIYVIAACHATLLILQSFL 147
           LF+F++  Q+EN   R  F   +V+ A    LL+L+ FL
Sbjct: 17  LFNFYVDFQAENPKYRCVFGKCHVVNA-SKVLLLLEIFL 54


>Z81523-6|CAB04244.1| 2586|Caenorhabditis elegans Hypothetical protein
            F32H2.5 protein.
          Length = 2586

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +3

Query: 30   NNQIGKKYICLNTFNIKLNRIKRLFIMNYSNSVLIGN--WS---EERLKNEECGVTCRNY 194
            NN I    +C    N+K+NR +  F M+ +  +  G   W+   EE  K  E  +   +Y
Sbjct: 1505 NNGIVGLGLCFVEENLKINRFRSAFDMSANKEIRDGPPVWNIGDEETKKIVELDLHANDY 1564

Query: 195  ID 200
            +D
Sbjct: 1565 MD 1566


>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
           protein.
          Length = 2427

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 93  KRLFIMNYSNSVLIGNWSEERLKNEEC 173
           ++L  +++  S L+G W E R+  E+C
Sbjct: 457 EKLEKLDHEKSSLLGLWEERRILYEQC 483


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,884,104
Number of Sequences: 27780
Number of extensions: 110315
Number of successful extensions: 309
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 309
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 291481146
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)