Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d16
         (294 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   1.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   2.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        20   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        20   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        20   5.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   7.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          19   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      19   9.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    19   9.6  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = +3

Query: 174 GVTCRNYIDVHKR 212
           G+TC+   D+H R
Sbjct: 11  GITCQGVTDIHSR 23


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 2.4
 Identities = 9/29 (31%), Positives = 13/29 (44%)
 Frame = +3

Query: 141 WSEERLKNEECGVTCRNYIDVHKRYTAEN 227
           W EE   N + G+  R+Y+     Y   N
Sbjct: 42  WVEESFTNFDKGINWRSYVVCDVAYNNVN 70


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 173 WRDMPQLHRCS*KVHGGEHFHSGQRCGN*KE 265
           ++ M +L+     V+GG+  +  Q+CG  KE
Sbjct: 54  FQTMDRLYFVMEYVNGGDLMYQIQQCGKFKE 84


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 69  FNIKLNRIKRLFIMNYSNSVLIGNWSEERLKNEECGVTCRN 191
           ++ + N ++ L  + +S   L+G WS +   N     T  N
Sbjct: 178 YSARENELRALSSL-FSKGCLVGTWSPDPAINRRLKETYSN 217


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 69  FNIKLNRIKRLFIMNYSNSVLIGNWSEERLKNEECGVTCRN 191
           ++ + N ++ L  + +S   L+G WS +   N     T  N
Sbjct: 178 YSARENELRALSSL-FSKGCLVGTWSPDPAINRRLKETYSN 217


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.2 bits (40), Expect = 5.5
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +3

Query: 69  FNIKLNRIKRLFIMNYSNSVLIGNWSEERLKNEECGVTCRN 191
           ++ + N ++ L  + +S   L+G WS +   N     T  N
Sbjct: 178 YSARENELRALSSL-FSKGCLVGTWSPDPAINRRLKETYSN 217


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 7.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -1

Query: 180 SRHTPHSSVFPRSN 139
           +RH PH+SV    N
Sbjct: 424 ARHIPHASVTDSEN 437


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 114 YSNSVLIGNWSEERLKNE 167
           YS+ +L+  +  ERL N+
Sbjct: 261 YSHKLLLNRYYLERLSND 278


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +3

Query: 114 YSNSVLIGNWSEERLKNE 167
           YS+ +L+  +  ERL N+
Sbjct: 261 YSHKLLLNRYYLERLSND 278


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 19.4 bits (38), Expect = 9.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 49  FFPIWLFVVVNNYL 8
           F  +  F VVNNY+
Sbjct: 288 FLSLMEFAVVNNYM 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,015
Number of Sequences: 438
Number of extensions: 1685
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5994288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)