Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d14
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      30   0.15 
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo...    26   1.9  
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p...    26   2.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   5.7  
SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual           25   5.7  
SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces pombe...    25   5.7  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    24   7.6  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      24   7.6  

>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.15
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -2

Query: 161 ICFAVFFRFFGILHSHKHFI 102
           I F  FFRFFG L  ++HF+
Sbjct: 278 ILFVEFFRFFGYLFDYEHFV 297


>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 9/32 (28%), Positives = 23/32 (71%)
 Frame = -1

Query: 363 KIYNT*IHKSYLLFIFQQIA*NLWKILWQVWF 268
           ++Y+  +HK++L  +F+ ++ NL++++ Q  F
Sbjct: 195 RLYDQFMHKNHLCLVFELLSINLYELIKQNQF 226


>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 99  ENEMFVAMKNAKKTKENSE-ADMV 167
           E E F  +K  +KTKEN+E AD V
Sbjct: 197 EREDFTRLKKVQKTKENAEKADSV 220


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 137 FFGILHSHKHFIFFRTRSYQQFCLN 63
           F G+L  +  F  F+  S++QFC+N
Sbjct: 452 FIGVLDIYG-FEHFKKNSFEQFCIN 475


>SPBC17A3.08 |||TatD|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 312

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 45  ITVMVRIQAKLLVGSRTKENEMFVAMK 125
           + V VR+Q  L + SR  EN+ F  ++
Sbjct: 148 LKVAVRVQLPLFLHSRNAENDFFAILE 174


>SPCC16C4.02c |||DUF1941 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 548

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 122 HSHKHFIFFRTRSYQQFCLNPDHYSDINILVEHLT 18
           H HK     RT SY+Q     D Y+   +  +H+T
Sbjct: 7   HLHKGPKGVRTISYEQLLSEDDSYASEKLSEDHVT 41


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -2

Query: 365 TKYITHKYINPIYYSFFNK 309
           ++Y  H Y N  +YS FNK
Sbjct: 25  SQYRKHIYFNDCFYSTFNK 43


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 173 IVNHICFAVFFR---FFGILHSHKHF-IFFRTRSYQQFCLNPDHYSDINILVEH 24
           +V   CF  +F    FF  L +  HF  FFR   ++     PD  +  ++L  H
Sbjct: 104 VVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDIPDQTTLSSLLHRH 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,433,669
Number of Sequences: 5004
Number of extensions: 24366
Number of successful extensions: 72
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)