Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d14
         (399 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical...    30   0.53 
Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical pr...    28   2.8  
Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical p...    27   5.0  
U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical ...    26   8.7  

>AC084197-18|AAM44394.1|  546|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.4 protein.
          Length = 546

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
 Frame = +1

Query: 160 IWLTMVKTI--QQITMMKQTKQL--PCLQNQLNRTNLPTLEPYLPKN 288
           +W++++K +  + ITM+  +++L  P L    +  NLPT++PY+ +N
Sbjct: 301 LWISILKQMIGEDITMINTSRKLHTPRLAIVSSIVNLPTIQPYIFRN 347


>Z72515-1|CAA96681.1|  419|Caenorhabditis elegans Hypothetical
           protein T11A5.1 protein.
          Length = 419

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
 Frame = +1

Query: 133 KKRKKTAKQIW----LTMVKTIQQITMMKQTKQLPCLQN 237
           KK+K  A+++W    LT  +  Q  T  ++T +LP +QN
Sbjct: 212 KKKKTEAEKLWDNMSLTEKEVFQSHTRRRRTTRLPIIQN 250


>Z68298-10|CAA92607.1| 1034|Caenorhabditis elegans Hypothetical
            protein F44D12.1 protein.
          Length = 1034

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 234  KSIKSDKSTNARTILAKESSKDSKQFVEK 320
            KS+K  K  N      K SSK++KQ +EK
Sbjct: 952  KSVKQLKDVNEHICGEKISSKEAKQLIEK 980


>U28944-9|AAL02438.1|  122|Caenorhabditis elegans Hypothetical
           protein C18A3.9 protein.
          Length = 122

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 324 IINRIYVFMCYIFCLLIKLSIN 389
           I+N  +VFM YIF +L+ +  N
Sbjct: 82  IVNNFFVFMYYIFLVLVNVCNN 103


>AF003390-5|AAB54270.2|  873|Caenorhabditis elegans Hypothetical
           protein R155.4 protein.
          Length = 873

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +3

Query: 21  KMFH*NVNITVMVRIQAKLL--VGSRTKENEMFVAMKNAKKTKENS 152
           K F    ++ +++   AK+L  +    K  + FV+ KN+ KTKE+S
Sbjct: 551 KAFPEATSVPLVITSVAKILPDIKKDMKNLQTFVSKKNSNKTKESS 596


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,722,855
Number of Sequences: 27780
Number of extensions: 132637
Number of successful extensions: 459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)