Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d13
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34027| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_29294| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_25785| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_34027| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 223

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
 Frame = +3

Query: 381 AIEYSMVEERVCYAACMDGAIYRIEIPNVVAPIEEP--PLFCIRADP 515
           A+ YS++E +     CMD  I+ I+ P     + +P  PL C+  +P
Sbjct: 161 AVAYSVLEFQKSTDICMDSYIWDIDNPTKPDMVLKPVSPLICLEYNP 207


>SB_30344| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/47 (29%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +3

Query: 3   RLRYKHM-EEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEK 140
           R+ +K + +EKN ++++ IK +K HY + E  ++     ++  +KEK
Sbjct: 47  RMHHKRVVQEKNRLITD-IKRLKKHYSSYEPTLVTLKHKYEVAMKEK 92


>SB_29294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 176

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 444 YRIEIPNVVAPIEEPPLFCIRADPALESFNMQFYGSP 554
           ++I++ NV A  E   ++CI   P  ES+    Y  P
Sbjct: 76  WKIKVLNVAASFESETVWCIITTPNSESYAASIYHPP 112


>SB_25785| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +3

Query: 549 SPGISSYSTPFITQRSPALSLGLTADQTKMAVGYGD 656
           +P ++S++ P+I Q   +L+    ADQ +    YGD
Sbjct: 61  TPPVTSHTGPYIHQSESSLTTPPLADQKRTIYTYGD 96


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,021,163
Number of Sequences: 59808
Number of extensions: 434180
Number of successful extensions: 1125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)