Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d13
         (685 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    29   0.055
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    28   0.095
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    27   0.22 

>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 18/80 (22%), Positives = 33/80 (41%)
 Frame = +3

Query: 3   RLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFL 182
           R RY    E+ +  + Y    +Y    E +         + R KE+K+ + + +N+   +
Sbjct: 36  RKRYSRSREREQ--NSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNI 93

Query: 183 KGTANNITYNRWYFTENGYI 242
               NN  YN+  +    YI
Sbjct: 94  SNYNNNNNYNKKLYYNINYI 113


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 27.9 bits (59), Expect = 0.095
 Identities = 18/80 (22%), Positives = 31/80 (38%)
 Frame = +3

Query: 3   RLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFL 182
           R RY    E+ +    Y     Y    E +         + R KE+K+ + + +N+   +
Sbjct: 274 RKRYSRSREREQ--KSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNI 331

Query: 183 KGTANNITYNRWYFTENGYI 242
               NN  YN+  +    YI
Sbjct: 332 SNYNNNNNYNKKLYYNINYI 351


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 17/80 (21%), Positives = 33/80 (41%)
 Frame = +3

Query: 3   RLRYKHMEEKNEVLSEYIKNIKYHYKNEENPVIWYPLFHKTRLKEKKVYAWIQDNFAKFL 182
           R RY    E+ +  + Y    +Y    E +         + R KE+K+ + + +N+   +
Sbjct: 36  RKRYSRSREREQ--NSYKNEKEYRKYRERSKERSRDKRERERSKERKIISSLSNNYISNI 93

Query: 183 KGTANNITYNRWYFTENGYI 242
               N+  YN+  +    YI
Sbjct: 94  SNYNNDNNYNKKLYYNINYI 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,633
Number of Sequences: 438
Number of extensions: 4308
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)