Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d11
         (695 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1231 - 35104832-35105002,35105104-35105167,35105267-351055...    31   1.2  
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874...    29   2.7  
12_02_1279 + 27510605-27513301                                         29   3.5  
03_05_0060 + 20363857-20365359                                         29   3.5  
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715     28   8.1  

>02_05_1231 -
           35104832-35105002,35105104-35105167,35105267-35105557,
           35105755-35105999,35106410-35106489,35106890-35107006,
           35107150-35108002,35108081-35108161
          Length = 633

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 20  IKFQSIENLQYRINLKCVXAWMLLINYXLLCPQFEAVAADAHRPVTPPEIVLRA-AAEDL 196
           +KF++ EN+ +R  +     W  L++   + PQ    A     PV P E++ R  AA+  
Sbjct: 560 VKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGA-----PV-PQELLDRVLAAQAY 613

Query: 197 WSQFTVK*HISDDFPD 244
           WS+   K H     P+
Sbjct: 614 WSEQQAKLHGDPPVPE 629


>06_03_1191 +
           28286685-28287008,28287149-28287211,28287377-28287461,
           28287561-28287623,28287954-28288029,28288190-28288223,
           28289553-28289659,28289738-28289807,28289852-28289950
          Length = 306

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -3

Query: 264 LTQHLMVSGKSSDMCYLTVNCDQRSSAAARSTISGGV 154
           ++ HL  SGKSS      V  DQ S+ AA S  +G +
Sbjct: 96  VSSHLRTSGKSSQAYAFAVFADQPSALAAMSATNGRI 132


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +1

Query: 97  LQXVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 195
           L  V +A  GGC   P PC S   CTP  +G S
Sbjct: 298 LPTVWAAPTGGCD-LPLPCRSLGLCTPGTNGSS 329


>03_05_0060 + 20363857-20365359
          Length = 500

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -1

Query: 245 CLENHRICAT*L*TVTRDPPLQH--GVQFLVELQGDGHPLQPPRIADITXCNLLIA 84
           C +  R+C   L    R PPL    GV  L  L   GHPL   R+A +   NL +A
Sbjct: 23  CTKPLRLC---LCGCLRRPPLDTAVGVTVLQHLMEAGHPLNSTRVARLGLRNLAVA 75


>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
          Length = 1536

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 56   INLKCVXAWMLLINYXLLCPQFEAVAADAHRPVTPPEIVLRAAAEDLW 199
            INL C+  ++  ++  L  P    VAA A  P  PPE +LR   E  W
Sbjct: 1088 INLPCLSPFISPMSSGLPAPI--KVAATAKGPFVPPENLLRFQPETGW 1133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,005,458
Number of Sequences: 37544
Number of extensions: 341402
Number of successful extensions: 1010
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)