Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d11
         (695 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)               30   1.6  
SB_23069| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)                 29   4.8  
SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)               28   8.3  

>SB_1652| Best HMM Match : Keratin_B2 (HMM E-Value=0.031)
          Length = 563

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 373 IKLCC*CYNVLEICSVLVAKVV*FCESVYCILL 471
           +KLCC   + + +C V+   VV  C  +YC++L
Sbjct: 448 VKLCCVVLHCVVLCCVVPCCVVLCCVVLYCVVL 480


>SB_23069| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +1

Query: 130 CSGCPSPCNSTRNCTPCCSGGSLVT-VYSQ 216
           C  C +PC   +N  PC  G SL++  Y Q
Sbjct: 329 CGQCLNPCTYGQNLNPCTYGQSLISCTYGQ 358


>SB_57975| Best HMM Match : 7tm_1 (HMM E-Value=6.8e-15)
          Length = 256

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -1

Query: 386 QHNLISRVRLVSIGFDIPTVMTDRYSSFVKGSNRTRRLAYS 264
           Q N ++ V L++ G  +  +  +RY++ VK    +RRL  S
Sbjct: 74  QPNTLANVALLATGLTLMVLSVERYNALVKPMRLSRRLTRS 114


>SB_54009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 98  NLLIASMRSHILDLFCTVNFLYFEILSFVK 9
           +LL     +HI  L  T++FLY+ IL  VK
Sbjct: 236 DLLAIDFPTHICLLILTIHFLYYVILELVK 265


>SB_34756| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 255

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = -1

Query: 386 QHNLISRVRLVSIGFDIPTVMTDRYSSFVKGSNRTRRL 273
           Q N IS V +++ G+ +  +  +RY++ ++     RRL
Sbjct: 17  QANTISNVPILATGWTLTVIAIERYNALIQPMKNARRL 54


>SB_36177| Best HMM Match : Integrin_beta (HMM E-Value=0)
          Length = 722

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/35 (28%), Positives = 14/35 (40%)
 Frame = +1

Query: 91  NKLQXVMSAIRGGCSGCPSPCNSTRNCTPCCSGGS 195
           N     + A    C  CP  C + R+C  C   G+
Sbjct: 547 NATSGYVGAFCDDCPTCPGQCEANRDCVQCMKFGT 581


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,848,871
Number of Sequences: 59808
Number of extensions: 391207
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)