Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d10
         (773 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    33   0.045
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos...    33   0.045
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    31   0.14 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    31   0.24 
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    29   0.74 
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    28   1.7  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    28   1.7  
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    27   2.3  
SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|...    27   2.3  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    27   2.3  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    27   2.3  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    27   2.3  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    27   3.9  
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa...    26   5.2  
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha...    26   6.9  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    25   9.1  

>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 19/82 (23%), Positives = 36/82 (43%)
 Frame = +3

Query: 210 PLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKF 389
           P   F  E L H+   L A  L     V   W +++   + +H+L+    G   K++ + 
Sbjct: 10  PASIFSHETLLHVLNDLSAHDLAALERVSRSWNSIVRRSSVWHNLYLSEFGT--KHLRRH 67

Query: 390 AHRLSRPQITWHELYRSLTLWR 455
             R+ + +  W  L+R  + W+
Sbjct: 68  G-RIEKKRRNWKGLFRRQSNWK 88


>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
           Pof11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 506

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +3

Query: 216 ESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 347
           E FP E+   +F++L    L KC+ +  RWK +++    + +L+
Sbjct: 74  EVFPEEVSLRVFSYLDQLDLCKCKLMSKRWKRLLEDPGIWKALY 117


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 186 SDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVI-DTLNKYHSLWYKFCG 362
           S N    T L + P EIL  IF+FL  + L   +  C  WK ++ D L+   + ++ F G
Sbjct: 23  SSNNTNRTVL-NLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHFAG 81


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +3

Query: 213 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC 359
           L   P EI   I +FL A+ L +  +V   WK + D       +W++ C
Sbjct: 110 LSLLPVEISFRILSFLDARSLCQAAQVSKHWKELADD----DVIWHRMC 154


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 29.1 bits (62), Expect = 0.74
 Identities = 18/49 (36%), Positives = 24/49 (48%)
 Frame = +3

Query: 225 PTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDF 371
           P E+L  I   L  K + +C +VC  W+   D + K  SL   FC  DF
Sbjct: 140 PREVLLCILQQLNFKSIVQCMQVCKHWR---DCIKKEPSL---FCCLDF 182


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 440 RPVELVPSDLRTGEPVSEFVNVFKVL 363
           +PV  +PS L  GE +S F N  K+L
Sbjct: 853 QPVNTIPSSLSLGEQLSAFNNFMKLL 878


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 761 SLQYHEKY*LCAWGYVLVSCYEQM*IAIHQEYCVVG 654
           S+QY  KY +CA G  L S Y    + +   YCV G
Sbjct: 231 SIQYQGKYIMCAGGSFL-SVYTTPDMQLQNTYCVDG 265


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -1

Query: 485 VVVLSSEVQLPPQSQRPVELVPSDLRTGEP 396
           +  L++E ++PPQ  +P   VPS + T  P
Sbjct: 299 ITKLNNEKRIPPQLAQPTSHVPSFIDTNSP 328


>SPBC25B2.11 |pof2||F-box protein Pof2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = +3

Query: 225 PTEILSHIFTFLPAKQLTKCREVCIRWKN-VIDTL 326
           P E+  +I ++L A +L     VC  W+N +I TL
Sbjct: 4   PNEVCFNILSYLEADELRCKSTVCTSWRNFIIPTL 38


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
 Frame = +3

Query: 207 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGK--DFKNV 380
           +P      +IL  I T+L  K +    E C     V D      ++W++FC +     NV
Sbjct: 4   SPFLELSYDILLEISTYLDYKDIVHLSETCKSLSYVFDD----KTIWHRFCARVQGLTNV 59

Query: 381 YKFA-HRLSRPQITWHE 428
                    RP   W +
Sbjct: 60  VPVVDDNYKRPYAVWKD 76


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 21/79 (26%), Positives = 39/79 (49%)
 Frame = +3

Query: 474 QHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNRYVE 653
           Q Y ++   T VAS  Q +R +R+    +  +   + Y L  L      ++   Y+R + 
Sbjct: 749 QPYVDYVVETFVASSTQ-WRLMRD-VGSIRLQYACLQYMLAVLDGLNIDLLL--YSRILS 804

Query: 654 TDDTVLLMNSNLHLFITRN 710
           +     L N+NLH+++TR+
Sbjct: 805 SKVRDNLQNNNLHVYLTRH 823


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -1

Query: 167 CKFITTYIEVYSIENHFEVFSVV*FLCNFNILKHISTGIFDSIMKFDVF 21
           CK I     + + + HF+VF+ V  L N   LK +  G  D  + + ++
Sbjct: 388 CKLIVNDALILAKKFHFDVFNAVTVLDNNLFLKDLKFGEGDGFLNYYIY 436


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -2

Query: 232 SVGNDSKGVTSSSLSDIFTIMCASLSLPI*KFIQSKIILKFLV*CSFYVILIF*NIFPLG 53
           S  ND   V S  L+D+FTI+   +     K  +    L+    C   +IL+  N+F +G
Sbjct: 118 SFSNDILKVLSEWLTDLFTII-DDMRAQSRKSFKGSAELRNYTRCFRQIILLLTNMFRVG 176

Query: 52  F 50
           F
Sbjct: 177 F 177


>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
           Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1215

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +3

Query: 435 RSLTLWRQLHLARQHYD--EFASATTVASEIQ 524
           R  T W   HL R+HYD   F  + T AS I+
Sbjct: 278 RVQTFWTASHLWRRHYDILPFNVSPTTASPIE 309


>SPAC13G7.04c |mac1||membrane anchored protein Mac1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 756

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = +2

Query: 221 VSHRNIIAHFHFSTSETVDE-----MPGSLHPLEERHRYPQQIP 337
           ++H  I  HF  +TS   DE     MP +  P+ +   +P  +P
Sbjct: 408 ITHPGIPNHFAKTTSSVFDEPPATRMPQTRSPVNDHSSFPSDLP 451


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
 Frame = +3

Query: 588 DLDTLQRSKRAVI------YGDYNRYVETDDTVL 671
           +LDTL   KR +       + DY  Y ETDD V+
Sbjct: 545 ELDTLLNGKRDIDVQDWKRFTDYRSYTETDDIVI 578


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,118,386
Number of Sequences: 5004
Number of extensions: 63787
Number of successful extensions: 198
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)