Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2d10
(773 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10) 41 0.001
SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.036
SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11) 35 0.064
SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11) 34 0.11
SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05) 33 0.26
SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.26
SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11) 33 0.34
SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12) 32 0.59
SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09) 27 0.80
SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05) 31 1.4
SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 4.2
SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08) 29 5.5
SB_12718| Best HMM Match : rve (HMM E-Value=0.0031) 29 5.5
SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08) 29 5.5
SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05) 29 5.5
SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.5
SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3) 28 7.3
SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.6
SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24) 28 9.6
SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44) 28 9.6
>SB_6560| Best HMM Match : F-box (HMM E-Value=2e-10)
Length = 216
Score = 40.7 bits (91), Expect = 0.001
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 18/156 (11%)
Frame = +3
Query: 213 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFA 392
+E T++L HIF+ L A+ L C +VC +W V + + L ++ C K +N+
Sbjct: 1 MEILGTDVLLHIFSHLDAQSLCSCSQVCKQWYEVSTISSLWKMLVFQQCRK--RNI---R 55
Query: 393 HRLSRPQITWHELYRSL---TLWR---QLHLARQHYDEF-ASATTVASEIQGFRYL--RN 545
L R + TW E + L L+R Q + YDE S + E Y+ +N
Sbjct: 56 PHLGRAE-TWKERFFQLHFKCLYRRSSQREFLKPSYDELEKSLKRLERERYVILYVKAKN 114
Query: 546 G------TAGVHTKAGVVYYD---LDTLQRSKRAVI 626
G AG + G YY+ +T+ + KR ++
Sbjct: 115 GIREFVKMAGFEYRLGNAYYEHTKSETISQKKRIIL 150
>SB_41941| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 254
Score = 39.5 bits (88), Expect = 0.003
Identities = 25/89 (28%), Positives = 42/89 (47%)
Frame = +3
Query: 189 DNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKD 368
++ D + TEIL IF+ L A+ + + C R + L LW + C +D
Sbjct: 13 ESNDGFCYITCLSTEILLFIFSLLDARSIVRASRACTR---LHFALKYCDPLWRRLCRRD 69
Query: 369 FKNVYKFAHRLSRPQITWHELYRSLTLWR 455
Y+ A P T++++YRSL++ R
Sbjct: 70 ----YELALSFRAPFDTYYDIYRSLSMSR 94
>SB_41663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 180 KMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 305
K+ +VT + + P EIL+ IF++L K L + +VC W
Sbjct: 101 KLKAKSTQVTLIHNLPPEILNKIFSYLNPKDLCRTSQVCKSW 142
>SB_52387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1088
Score = 35.1 bits (77), Expect = 0.064
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 213 LESFPTEILSHIFTFLPA--KQLTKCREVCIRWKNVIDT 323
+ES P E+++HIF+F +L R VC +WK +ID+
Sbjct: 1 MESLPEEMIAHIFSFFHQIYGKLLLLRTVCRKWKIIIDS 39
>SB_4015| Best HMM Match : F-box (HMM E-Value=5.9e-11)
Length = 130
Score = 35.1 bits (77), Expect = 0.064
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +3
Query: 174 IVKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNV 314
I+ + E +E P +L +F+FL + L K VC RW+++
Sbjct: 13 IISNDSKKQEKPSIERLPDSVLLQVFSFLCQRSLCKLALVCKRWRDI 59
>SB_46499| Best HMM Match : F-box (HMM E-Value=1.2e-11)
Length = 335
Score = 34.3 bits (75), Expect = 0.11
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 177 VKMSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 347
+KM+ + + SFP ++ +IF +L K L +VC RW + L K SLW
Sbjct: 14 LKMAAKVVQTALICSFPDNVMLNIFRYLDIKALCAASKVCRRWYH----LGKDRSLW 66
>SB_20853| Best HMM Match : F-box (HMM E-Value=1.1e-05)
Length = 637
Score = 33.1 bits (72), Expect = 0.26
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 222 FPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRL 401
F EIL IF + A LTK VC +W ++++K SLW + + +++ +
Sbjct: 4 FLDEILLQIFRYFDAFILTKICSVCKQW----NSISKTPSLWRRLVLRRWQSQRFLFANV 59
Query: 402 SRPQITWHELYRSL 443
+ W ++Y+ +
Sbjct: 60 PPSSVNWRKVYQEI 73
>SB_10275| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 947
Score = 33.1 bits (72), Expect = 0.26
Identities = 24/68 (35%), Positives = 32/68 (47%)
Frame = +3
Query: 219 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHR 398
S +E+LS I ++LPAK L E C R+K + + +LW C K F A R
Sbjct: 18 SLSSEVLSIILSYLPAKTLLNLSETCRRFKELCFECD---TLWKDLC-KQFS-----ASR 68
Query: 399 LSRPQITW 422
RP W
Sbjct: 69 DLRPSKIW 76
>SB_22456| Best HMM Match : LRR_1 (HMM E-Value=1.4e-11)
Length = 459
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Frame = +3
Query: 177 VKMSDNEDEVTPLES---FPTEILSHIFTFLPAKQLTKCREVCIRWKNVID 320
+KM +D L + P E++S+IF+FLP + VC W D
Sbjct: 1 MKMEKKKDTFNTLPASCQLPQEVVSYIFSFLPLADIKSSARVCHLWAKASD 51
>SB_38067| Best HMM Match : DUF525 (HMM E-Value=2.5e-12)
Length = 433
Score = 31.9 bits (69), Expect = 0.59
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +3
Query: 183 MSDNEDEVTPLESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTL 326
+S N L++ PT L+ + ++L A+ L +C VC R+ + +L
Sbjct: 4 VSQNWLSCLSLDNLPTIPLASVLSYLNARDLARCSRVCRRFDEICSSL 51
>SB_43342| Best HMM Match : F-box (HMM E-Value=4.1e-09)
Length = 456
Score = 27.5 bits (58), Expect(2) = 0.80
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 207 TPLESFPTEILSHIFTFLPAKQLTKCREVCIRW 305
T + ++ IF++L L K EVC RW
Sbjct: 44 TRISELDNPVILKIFSYLSRADLLKAAEVCKRW 76
Score = 22.6 bits (46), Expect(2) = 0.80
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +3
Query: 420 WHELYRSLTLWRQLHL 467
WHEL +LWR + L
Sbjct: 76 WHELSFDRSLWRNVDL 91
>SB_23713| Best HMM Match : Disintegrin (HMM E-Value=6.6e-05)
Length = 1154
Score = 30.7 bits (66), Expect = 1.4
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +3
Query: 465 LARQHYDEFASATTVASEIQG--FRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDY 638
L ++Y S T ++G +RYL +H G Y L+T R+ + G+Y
Sbjct: 497 LKGEYYHYLNSNRTTIHALKGEYYRYLNANRTTIHALKGETYRYLNT-NRTTIHALKGEY 555
Query: 639 NRYVETDDTVL 671
RY+ ++ T +
Sbjct: 556 YRYLNSNRTTI 566
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/65 (27%), Positives = 30/65 (46%)
Frame = +3
Query: 477 HYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLDTLQRSKRAVIYGDYNRYVET 656
HY T A + + +RYL +H G Y L+T R+ + G+Y RY+ +
Sbjct: 647 HYLNTNRTTIHALKGETYRYLNANRTTIHALKGETYRYLNT-NRTTIHALKGEYYRYLNS 705
Query: 657 DDTVL 671
+ T +
Sbjct: 706 NRTTI 710
Score = 28.7 bits (61), Expect = 5.5
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Frame = +3
Query: 426 ELYRSLTLWRQ-LH-LARQHYDEFAS--ATTVASEIQGFRYLRNGTAGVHTKAGVVYYDL 593
E YR L R +H L +HY S T AS+ + +RYL +H G Y L
Sbjct: 734 ETYRYLNTNRTTIHALKGEHYHYLNSNRKTIHASKGETYRYLNTNRTTIHALKGEYYRYL 793
Query: 594 DTLQRSKRAVIYGDYNRYVETDDTVL 671
++ R+ + G+ RY+ + T +
Sbjct: 794 NS-NRTTIHALKGETYRYLNANRTTI 818
Score = 27.9 bits (59), Expect = 9.6
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +3
Query: 417 TWHELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHTKAGVVYYDLD 596
T+H L + T L Y T A + + +RYL +H G Y L+
Sbjct: 645 TYHYLNTNRTTIHALKGETYRYLNANRTTIHALKGETYRYLNTNRTTIHALKGEYYRYLN 704
Query: 597 TLQRSKRAVIYGDYNRYVETDDTVL 671
+ R+ + G+ RY+ T+ T +
Sbjct: 705 S-NRTTIHALKGETYRYLNTNRTTI 728
>SB_24188| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 628
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 219 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVID 320
S P E+L I FLPA+ L R V K+++D
Sbjct: 23 SLPEEVLIIILKFLPAQDLVNIRLVSTNLKHLVD 56
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 276 TKCREVCIRWKNVID--TLNKYHSLWYKFCGKDFK-NVYKFAHRLSRPQIT 419
T+CREV I V +L KYH LW F GK K + K + RP +T
Sbjct: 31 TRCREVGITLFTVSHRKSLWKYHELWPLFSGKLVKPHPSKLFYIPQRPYMT 81
>SB_40413| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 219 SFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLWYKFC 359
+ P + L +F FL K L +VC W+ SLW K C
Sbjct: 5 TLPLDELVLVFDFLHPKDLVNAAQVCKLWREAAGV----SSLWKKHC 47
>SB_29471| Best HMM Match : F-box (HMM E-Value=2.8e-08)
Length = 473
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 213 LESFPTEILSHIFTFLPAKQLTKCREVCIRWKNVIDTLNKYHSLW 347
++ P ++ +F+FL L + VC +W+ + HSLW
Sbjct: 1 MDGLPDVVVLKVFSFLSVADLGQVSRVCYQWQRIAYD----HSLW 41
>SB_12718| Best HMM Match : rve (HMM E-Value=0.0031)
Length = 1667
Score = 28.7 bits (61), Expect = 5.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 426 ELYRSLTLWRQLHLARQHYDEFASATTVASEIQGFRYLRNGTAGVHT 566
E R L W +L+ A+++ + + VASE QG LR G+HT
Sbjct: 1099 EAGRRLAKWNRLNRAKKNAVQHVESP-VASESQGREGLRPRAEGIHT 1144
>SB_55795| Best HMM Match : 7tm_1 (HMM E-Value=3.9e-08)
Length = 363
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 301 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 396
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_38076| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-05)
Length = 577
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 301 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 396
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_7037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 28.7 bits (61), Expect = 5.5
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 301 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 396
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLAAVANVLT 33
>SB_7673| Best HMM Match : DUF805 (HMM E-Value=2.3)
Length = 100
Score = 28.3 bits (60), Expect = 7.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 301 AGRTSSIPSTNTIHCGISFAERTLKTFTNSLT 396
+G TS P+TNTI + E TL N LT
Sbjct: 2 SGTTSGKPNTNTIAIAVFLGEGTLGAVANVLT 33
>SB_34912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 554
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 264 AKQLTKCREVCIRWKNVIDTLNKYHSLWYKFCGKDFKNVYKFAHRLSRPQITWHELYRSL 443
A+ KC ++ W+++I + Y+S CG +Y+ ++RP +++ R L
Sbjct: 276 ARPYYKCTKLLQMWRDLITNVPSYYS-----CGATLLQMYQVITDVARP---YYKCTRLL 327
Query: 444 TLWRQL 461
W L
Sbjct: 328 QFWHDL 333
>SB_12443| Best HMM Match : WD40 (HMM E-Value=1e-24)
Length = 515
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 216 ESFPTEILSHIFTFLPAKQLTKCREVCIRW 305
+ P +L IF FL K++ EVC +W
Sbjct: 26 QDLPDSLLLFIFGFLTPKEVLTAGEVCRKW 55
>SB_7904| Best HMM Match : F420_oxidored (HMM E-Value=9.94922e-44)
Length = 851
Score = 27.9 bits (59), Expect = 9.6
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Frame = +3
Query: 165 AHIIVKMSDN----EDEVTPLESFPTE--ILSHIFTFLPAKQLTKCREVCIRWKNVID 320
A + +KMSD E T + S P +L +F+ L K L CR VC +K ++D
Sbjct: 20 AWLKIKMSDCVYQIEKHQTTILSLPHRDVLLRAVFSKLSFKTLFSCRAVCRLFKELVD 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,817,956
Number of Sequences: 59808
Number of extensions: 466843
Number of successful extensions: 1248
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1243
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -