Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d09
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    56   5e-09
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   2.0  
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    27   2.0  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   2.0  
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb...    26   4.6  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    26   4.6  

>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 56.0 bits (129), Expect = 5e-09
 Identities = 36/120 (30%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
 Frame = +1

Query: 358 RIDIIHSNVIWQRKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGV 537
           R DI+H  VI++        A +K R E+   G+K + QKG G AR G   SP+ RGG  
Sbjct: 34  RRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKLYRQKGTGHARVGDASSPIRRGGAK 93

Query: 538 AHGPRSGKSHFFMLPFHLRLHGLT--TTLSAKLAQDDLHIVKD-LELPTDESQYLVDLIE 708
           +HGP   K   F      +++ L     LS +   ++L I+++ + L   +++ L+++++
Sbjct: 94  SHGP---KPRDFSTKLQTQVYNLAMRIALSTRFINNELTILENPINLSQPKTRILLEVLK 150


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +1

Query: 496 HG--SIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTT-----TLSAKLAQDDLHIV 654
           HG  ++   L +  G+    ++G + F       +  G+T      +L A++  DD+   
Sbjct: 30  HGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAEMTDDDM--- 86

Query: 655 KDLELPTDESQYLVDLIEN 711
           KD++ P D + +LV+LI++
Sbjct: 87  KDMKEPADGTDFLVNLIDS 105


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 151 SPQIRLCSLNSAAVTTTTANKTINILKKEW 240
           S  IRLC + S + T + +  T N+L  +W
Sbjct: 168 SSSIRLCDMQSGSYTHSLSGHTGNVLAVDW 197


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
 Frame = +1

Query: 496 HG--SIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTT-----TLSAKLAQDDLHIV 654
           HG  ++   L +  G+    ++G + F       +  G+T      +L A++  DD+   
Sbjct: 30  HGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAISLFAEMTDDDM--- 86

Query: 655 KDLELPTDESQYLVDLIEN 711
           KD++ P D + +LV+LI++
Sbjct: 87  KDMKEPADGTDFLVNLIDS 105


>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 40  KIKYRNVLKHFLLCV*LIKSS*NMASILIN 129
           K  +RNV KH L     +K++ N+A IL++
Sbjct: 267 KYSWRNVSKHILQQAATVKNADNLAEILLS 296


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +1

Query: 136  KRLHVSPQIRLCSLNSAAVTTTTANKTINILKKEWEFPPLYTKPREVWIENLDSVEE 306
            ++ H    ++   LNS     +T++ T++ILK   E   L+TK      E +  + E
Sbjct: 1091 EKTHNINDVKSGPLNSDENIYSTSSTTLSILKDVQELKSLHTKEANQLSERIKEISE 1147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,233,511
Number of Sequences: 5004
Number of extensions: 73353
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)