Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d09
         (712 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15339| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_14034| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_29696| Best HMM Match : Herpes_US9 (HMM E-Value=0.56)               29   4.9  
SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 28   6.5  

>SB_15339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
 Frame = -3

Query: 551 RGPWATPPPRNRGDLIEPCLARPNPFCGHG-----FLPPPRTSA 435
           RG    PPP N  DL+ PC+   N  C  G       PPPR S+
Sbjct: 69  RGCIVPPPPPNIWDLLRPCIVTSNS-CSPGDPLVLERPPPRWSS 111


>SB_14034| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 190

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = -3

Query: 434 LVLVCAQETHLYFLCHITLLWIMSILGGAA*TMGCNSIKPSFFSSTLSKFSIQTSLGLVY 255
           L+L+C Q T   F  +  LL ++ + G AA     N +       T + F     L L+ 
Sbjct: 102 LLLICVQSTAASFYQYNYLL-LICVQGTAASFYQYNYLLLICVQGTAASFYQYNYLLLIC 160

Query: 254 SGGNSHSFFKMLIVLFAVVVVTAAEFNEH 168
             G + SF++   +L   V  TAA F ++
Sbjct: 161 VQGTAASFYQYNYLLLKCVQSTAASFYQY 189



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = -3

Query: 434 LVLVCAQETHLYFLCHITLLWIMSILGGAA*TMGCNSIKPSFFSSTLSKFSIQTSLGLVY 255
           L+L+C Q T      +  LL ++ + G AA     N +   F  ST + F     L L+ 
Sbjct: 12  LLLICVQSTAASSYQYNYLL-LICVQGTAASFYQYNYLLMIFVQSTAASFYQYNYLLLIC 70

Query: 254 SGGNSHSFFKMLIVLFAVVVVTAAEFNEH 168
               + SF++   +L   V  TAA F ++
Sbjct: 71  VQSTAASFYQYNYLLLICVQSTAASFYQY 99



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 25/89 (28%), Positives = 40/89 (44%)
 Frame = -3

Query: 434 LVLVCAQETHLYFLCHITLLWIMSILGGAA*TMGCNSIKPSFFSSTLSKFSIQTSLGLVY 255
           L+L+C Q T   F  +  LL ++ +   AA     N +      ST + F     L L+ 
Sbjct: 66  LLLICVQSTAASFYQYNYLL-LICVQSTAASFYQYNYLLLICVQSTAASFYQYNYLLLIC 124

Query: 254 SGGNSHSFFKMLIVLFAVVVVTAAEFNEH 168
             G + SF++   +L   V  TAA F ++
Sbjct: 125 VQGTAASFYQYNYLLLICVQGTAASFYQY 153


>SB_29696| Best HMM Match : Herpes_US9 (HMM E-Value=0.56)
          Length = 632

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 487 RARHGSIRSPLFRGGGVAHGPRSGKSHFFMLPFHLRLHGLTTTLS 621
           R  H   R P   GG V    RSG SH    P H     +  T++
Sbjct: 317 RRGHRECRQPRLEGGVVTFFARSGGSHAMRSPGHHTAESIVETIN 361


>SB_3667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 518

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +1

Query: 592 RLHGLTTTLSAKLAQDDLHIVKDLELPTDESQYLVDLI 705
           R H LT  ++  +  DD   +K L  P +E Q ++ L+
Sbjct: 383 RYHALTGAITRAMRSDDAEYIKALRTPHNEQQPIMTLL 420


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
 Frame = -1

Query: 565 AICLSEDHGLHLHHEIGVILLSHVWRDPTLSVATV----SCL--HPELLLSSWY 422
           A CL     +  +   G+++ +H +RDPT+++AT+    SCL    E+L S  Y
Sbjct: 196 ASCLIMTTEILRNASTGIVMSNHDYRDPTVTIATLVPEASCLIMTTEILRSMLY 249


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,029,718
Number of Sequences: 59808
Number of extensions: 563639
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1393
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)