Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d09
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical ...   166   1e-41
Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical pr...    32   0.47 
AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical ...    30   1.4  
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.5  
Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.6  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical ...    28   7.6  
AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical ...    28   7.6  

>AF022982-7|AAB69933.1|  299|Caenorhabditis elegans Hypothetical
           protein T23B12.2 protein.
          Length = 299

 Score =  166 bits (404), Expect = 1e-41
 Identities = 78/175 (44%), Positives = 115/175 (65%), Gaps = 2/175 (1%)
 Frame = +1

Query: 190 VTTTTANKTINILKKEWEFPPL-YTKPREVWIENLDSVEEKKLGLIELHPMVYAAPPRID 366
           V++T++ ++I+  ++ W  P   + K  + W+ NLD++E++KLGL++LHP ++   PRID
Sbjct: 22  VSSTSSGESIDTRRELWRKPENPFIKTPQAWVSNLDTIEDEKLGLVDLHPDIFRTSPRID 81

Query: 367 IIHSNVIWQRKYRWVSWAHTKTRAEVRGGGKKPWPQKGLGRARHGSIRSPLFRGGGVAHG 546
           I+H N+ WQ  YR V      T+AE+ GGG+KPWPQK  GRA  GSIRSP F  GG A+G
Sbjct: 82  ILHRNLTWQSVYRNVQMTKMLTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANG 141

Query: 547 PRSGKSHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLE-LPTDESQYLVDLIE 708
            R  ++ F+MLP  +R+ GL   L+ K  QDDLHIV  ++ L   + +Y +DL E
Sbjct: 142 VRGPRTWFYMLPDAVRIQGLCVALTLKHTQDDLHIVDKIQNLQNGDPKYWIDLCE 196


>Z68215-1|CAA92450.1|  517|Caenorhabditis elegans Hypothetical
           protein C53B4.1 protein.
          Length = 517

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -1

Query: 523 EIGVILLSHVWRDPTLSVATVSCLHPELLLSSWYVPRKPIYI 398
           ++G+  +S  W+  T   A VSCL   +L+   Y+P  PI++
Sbjct: 216 QVGLAYISQEWKTATYICAAVSCLSLPILI---YLPESPIWL 254


>AF025467-2|AAN65301.1|  505|Caenorhabditis elegans Hypothetical
           protein R148.5b protein.
          Length = 505

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -3

Query: 557 PERGPWATPPPRNRGDLIEPCLARPNPFCG----HGFLPPP 447
           P RG +  PPP   G  + P    P P  G     GF+PPP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>AF025467-1|AAB71039.2|  528|Caenorhabditis elegans Hypothetical
           protein R148.5a protein.
          Length = 528

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = -3

Query: 557 PERGPWATPPPRNRGDLIEPCLARPNPFCG----HGFLPPP 447
           P RG +  PPP   G  + P    P P  G     GF+PPP
Sbjct: 299 PPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPP 339


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 115 KPCFKNFLLIIHTTENVSEHF 53
           K C+KNFLLII++  N   HF
Sbjct: 233 KKCYKNFLLIIYSLLNSLTHF 253


>Z81130-6|CAB03419.4|  312|Caenorhabditis elegans Hypothetical
           protein T23G11.7b protein.
          Length = 312

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -3

Query: 563 DLPERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLP 453
           +LP   P++ PPPRN+    E   + P P    G +P
Sbjct: 236 NLPSHTPFSAPPPRNQPQQYED-FSTPQPVAPPGSVP 271


>Z54270-3|CAA91027.2|  560|Caenorhabditis elegans Hypothetical
           protein F11C1.3 protein.
          Length = 560

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 471 TERVGSRQTWLNKITPISWWRCSPWSSLR 557
           T+ VG  +TW N +T + WW+    S LR
Sbjct: 246 TDYVGQIKTW-NGLTHLPWWKTEDTSDLR 273


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 557 PERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 447
           P  GP   PPP        P    P P  GHG +PPP
Sbjct: 356 PSAGPGMYPPP--------PPSRPPAPPSGHGMIPPP 384


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/37 (40%), Positives = 16/37 (43%)
 Frame = -3

Query: 557 PERGPWATPPPRNRGDLIEPCLARPNPFCGHGFLPPP 447
           P  GP   PPP        P    P P  GHG +PPP
Sbjct: 366 PSAGPGMYPPP--------PPSRPPAPPSGHGMIPPP 394


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +1

Query: 109 MASILINAIKRLHVSPQIRLCSLNSAAVTTTTANKTINILKKE 237
           M  I +   K  HV+P+ +L ++ +++ T     K +N +KKE
Sbjct: 196 MDPISMGRAKNAHVAPRKKLENVPASSETDKVVEKAVNPIKKE 238


>AF043697-4|AAO38636.1|  431|Caenorhabditis elegans Hypothetical
           protein F56C11.6b protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 276 NLSGFGVQRWKLPFL 232
           N +GFGV RW LPFL
Sbjct: 315 NSAGFGVFRWLLPFL 329


>AF043697-3|AAB97558.1|  548|Caenorhabditis elegans Hypothetical
           protein F56C11.6a protein.
          Length = 548

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -2

Query: 276 NLSGFGVQRWKLPFL 232
           N +GFGV RW LPFL
Sbjct: 432 NSAGFGVFRWLLPFL 446


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,980,464
Number of Sequences: 27780
Number of extensions: 423103
Number of successful extensions: 1156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1156
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)