Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d09
         (712 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   2.2  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   5.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   8.7  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 541 HGPRSGKSHFFMLPFHLRLHGLTTTLSAKLAQDDLHIVKDLE 666
           +G       +F  PF  RLH      +  L + D + V +LE
Sbjct: 91  YGSTPDSRDYFSRPFEKRLHSRLPGRNFNLLRADANSVNELE 132


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 352 PPRIDIIHSNVIWQRKYRWV 411
           P R +IIH   I   KY WV
Sbjct: 537 PARYNIIHFKQIEPGKYEWV 556


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +2

Query: 230 KRNGSFHRCTPNPERFGSRIWTV 298
           + N S H+C    E     +WTV
Sbjct: 553 RHNLSLHKCFMRVENVKGAVWTV 575


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +2

Query: 398 NIDGFPGHIPRREQKFGVEARNRGHRK 478
           ++D   GH  +++Q+   ++R R H K
Sbjct: 485 DLDAVTGHQSQQQQEEQTQSRVRAHLK 511


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 371 STATLYGKENIDGFPGHIP 427
           ST T Y K N   F  +IP
Sbjct: 382 STETYYSKHNTQQFTQYIP 400


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,468
Number of Sequences: 438
Number of extensions: 4924
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)