Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d08
         (697 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    23   1.8  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.2  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   4.2  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    21   9.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.6  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 211 VYCCDTRPKTPLRRSSCCDSKEF 279
           VYCCD      LR+   C  K++
Sbjct: 160 VYCCDNNFNVFLRQVFTCRCKDY 182


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +1

Query: 622 HYERKKPLSTHNACA 666
           H++R+ P   HN+C+
Sbjct: 6   HFDRESPNIDHNSCS 20


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/45 (28%), Positives = 18/45 (40%)
 Frame = -1

Query: 697 RRRADTKSEEVRKHCESTEVSFFRNDNKGYPVHPQNGNDEPRRRD 563
           +R   T + E R  C      F R+D+    V   NGN +    D
Sbjct: 363 QRHLRTHTGEKRFACPICNKRFMRSDHLAKHVKTHNGNGKKGSSD 407


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +1

Query: 124 PVLVTSSYPTRCEESPT 174
           P   T S PT+  E PT
Sbjct: 403 PTQTTESEPTQASEQPT 419


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 339 APLSFGFNPQALFKLLSNLLSAYLP 413
           AP     N  + F  LSNL + Y P
Sbjct: 494 APTGENSNSSSDFNFLSNLANDYTP 518


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +3

Query: 339 APLSFGFNPQALFKLLSNLLSAYLP 413
           AP     N  + F  LSNL + Y P
Sbjct: 442 APTGENSNSSSDFNFLSNLANDYTP 466


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,163
Number of Sequences: 336
Number of extensions: 3465
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18322480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)