Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d08
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)                    30   2.1  
SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069)        29   3.6  
SB_59348| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)                 28   8.3  
SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_37133| Best HMM Match : rve (HMM E-Value=0.23)                      28   8.3  
SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_27594| Best HMM Match : TFIIB (HMM E-Value=4.7e-20)                 28   8.3  
SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)        28   8.3  
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   28   8.3  

>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 558

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -1

Query: 610 YPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 503
           Y   PQ+  +E  RR    K+  R  YD H  PLPP
Sbjct: 327 YDQQPQHSTEEETRRLIGAKERQRHYYDQHARPLPP 362


>SB_57729| Best HMM Match : PADR1 (HMM E-Value=0.52)
          Length = 105

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -3

Query: 209 IDCGQCGKHG*HVGDSSHLVGYEDVTRTGATANGPQ 102
           I+C +C  H   V +S HLVG    + T +T+   Q
Sbjct: 70  IECSKCNSHQQSVDESRHLVGPGSKSTTDSTSRSSQ 105


>SB_15721| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = +1

Query: 433 VIPCYRYEDGRIDQPTVLMRRACEVAAGVRGRRKPFVETSYR 558
           +IP       ++D+ TVL R A +    +RGR  PF ET+Y+
Sbjct: 209 MIPMCNAMSRKLDKLTVL-RMAVQHMRALRGRAVPFTETNYK 249


>SB_38711| Best HMM Match : Phage_integrase (HMM E-Value=0.0069)
          Length = 331

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 610 YPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 503
           Y   PQ+  +E  RR    K+  R  +D H  PLPP
Sbjct: 142 YDQQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 177


>SB_59348| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 81

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 538 FVETSYRADPYDEVHRYHSEDEQGNLCYHYE 630
           FV+  Y  D YD+ + Y+ +D+ GN  Y+YE
Sbjct: 50  FVDEDYGRD-YDQDYYYYEQDDDGNY-YYYE 78


>SB_35552| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1044

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +1

Query: 538  FVETSYRADPYDEVHRYHSEDEQGNLCYHYE 630
            FV+  Y  D YD+ + Y+ +D+ GN  Y+YE
Sbjct: 1013 FVDEDYGRD-YDQDYYYYEQDDDGNY-YYYE 1041


>SB_45933| Best HMM Match : RVT_1 (HMM E-Value=3.2e-13)
          Length = 901

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 604 VHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 503
           + PQ+  +E  RR    K+  R  +D H  PLPP
Sbjct: 603 LQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 636


>SB_41668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 588

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +2

Query: 212 FTVVTLGRRHH*GGQVVVIARNLIAVIVTEIIAPLAKTE 328
           F++ ++ R HH  G ++ +A   + VIV+    P+ + E
Sbjct: 464 FSLFSMVRHHHFPGLIIYVASGAVMVIVSLFTKPVPREE 502


>SB_37133| Best HMM Match : rve (HMM E-Value=0.23)
          Length = 359

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 604 VHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLPP 503
           + PQ+  +E  RR    K+  R  +D H  PLPP
Sbjct: 281 LQPQHSTEEETRRLIGAKERQRHYFDQHARPLPP 314


>SB_34159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1234

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 275 NLIAVIVTEIIAPLAKTET-PHRPLVVRIQPTSPLQTAVQLVVSLLAN 415
           +++A+ +  +   L +T+  PH  L   +QP   L+T VQL  +L  N
Sbjct: 790 SIVAICIIMVWTELHQTKAHPHNALGTNVQPRDALRTNVQLRNALGTN 837


>SB_27594| Best HMM Match : TFIIB (HMM E-Value=4.7e-20)
          Length = 305

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 517 VRGRRKPFVETSYRADPYDEVHRYHSEDEQGNLCYHYERKK 639
           +R R   F +T       DE H+   E+EQ   C+ + RKK
Sbjct: 166 IRKRLGEFKDTPSSQLTIDEFHKIDLEEEQDPPCFTHARKK 206


>SB_21051| Best HMM Match : Abhydro_lipase (HMM E-Value=1.8e-33)
          Length = 991

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 554  IELIPTTRFIVTILRMNRVTFVIITKERNLCRLTMLAHLL 673
            I+L+ T    + +LR    T  ++ K  ++CR+  L+H+L
Sbjct: 942  IDLLRTATCTIDLLRTVTCTINLLRKFASVCRVRFLSHIL 981


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
 Frame = -1

Query: 622 DNKGYPVHPQNGNDEPRRRDQLDKKFLRRAYDAHGLPLP--PRRRASLEPLADQYG 461
           + K YP +  +GND  + +    +  L R+YD   L        ++S+ P  D  G
Sbjct: 417 NRKSYPGNQGDGNDRTKTKSSTQEDLLSRSYDKRKLTKEQLTETKSSVSPEKDYRG 472


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,720,280
Number of Sequences: 59808
Number of extensions: 437219
Number of successful extensions: 1291
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)