Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d04
         (701 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5 |Schizos...    80   3e-16
SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces p...    67   2e-12
SPBC11G11.04 |trs20||TRAPP complex subunit Trs20 |Schizosaccharo...    30   0.37 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    26   4.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    26   6.0  

>SPAC3G9.16c |bet5|SPAC688.15|TRAPP complex subunit Bet5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 79.8 bits (188), Expect = 3e-16
 Identities = 48/152 (31%), Positives = 85/152 (55%), Gaps = 17/152 (11%)
 Frame = +3

Query: 219 MTIYNLYIFDRYGTLLYYGEWNRSKQSGM----------SIEEE-GKLMYGMLFSIKSFV 365
           MTIY  YI+ R    ++   W  S ++ M          SIE++  KL++G++FS+++ V
Sbjct: 1   MTIYAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMV 60

Query: 366 SKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYM 545
            KI+    +D F  Y TSKY LH  ETP+ L+ +  T+ +   +  +L++IY  +YV+++
Sbjct: 61  KKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFV 118

Query: 546 IRNPLCEMGEP------IVSDLFKSKLDLFIK 623
           +++PL     P      I  ++F+  LD F++
Sbjct: 119 VKHPLYTHVPPSAEEGGINCEIFRITLDRFVR 150


>SPBC3B9.12 |||TRAPP complex subunit Trs23 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 132

 Score = 67.3 bits (157), Expect = 2e-12
 Identities = 37/132 (28%), Positives = 69/132 (52%)
 Frame = +3

Query: 225 IYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDGFS 404
           ++ L I +R G+L++  E+  S  +      E  ++ G +  + +  ++ISPL    G  
Sbjct: 1   MHALIIINRAGSLIFQREFGSSPTA--LTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQ 58

Query: 405 HYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIV 584
             +   + +H L+T +G+KFV+ T+ +    R  L+K Y E+Y  Y+++NP   +  PI 
Sbjct: 59  LLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFY-ELYSDYVLKNPFYTLEMPIK 117

Query: 585 SDLFKSKLDLFI 620
             LF  +L  +I
Sbjct: 118 CQLFDEQLKRYI 129


>SPBC11G11.04 |trs20||TRAPP complex subunit Trs20
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 16/56 (28%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
 Frame = +3

Query: 444 TPSGLKFVMNTDNQ-AQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKL 608
           TPS ++F++   NQ A  ++   ++++ E+Y+K ++ +P  +  +PI S  F  K+
Sbjct: 75  TPSNMRFMLLHQNQSADNIKLFFQELH-ELYIKTLM-SPFYQPNQPIRSQAFDLKV 128


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -3

Query: 267  TIKYHIDRICINCKLSFFILSLEYTVSRTKKITNFHKIN-IPDYKNNNINIFDL 109
            TI Y +DR C+ C     I+SL    S  K +T+ +  N + D++  +  I ++
Sbjct: 1098 TIDY-LDRNCVTCSDKHVIISLLLVSSWEKFLTSNNYSNYLADFETTHAQIMEM 1150


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 261 KYHIDRICINCKLSFFILS 205
           K H+ ++C+ C  SFFIL+
Sbjct: 240 KLHLVQVCLFCWFSFFILN 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,410
Number of Sequences: 5004
Number of extensions: 59943
Number of successful extensions: 167
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)