Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2d04
(701 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003) 29 4.8
SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34) 29 4.8
SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0) 29 4.8
SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083) 28 6.4
SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016) 28 8.4
SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
>SB_5271| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 62.9 bits (146), Expect = 2e-10
Identities = 31/100 (31%), Positives = 53/100 (53%)
Frame = +3
Query: 327 LMYGMLFSIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDL 506
++ M + + +K+SP G + + LHC ++ +GLKF++ TD + G+ L
Sbjct: 103 MLASMFHPLFAIAAKLSPEQRSSGIEVLEADSFKLHCFQSMTGLKFIVLTDPRQVGMDGL 162
Query: 507 LKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIKQ 626
LKKIY E+Y + ++NP + PI +LF L + Q
Sbjct: 163 LKKIY-ELYGDFALKNPFYSLDMPIRCELFDLNLQKALDQ 201
>SB_19075| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6500
Score = 30.7 bits (66), Expect = 1.2
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Frame = +3
Query: 384 DPKDGFSHYKT------SKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIY-AEIYVKY 542
+ ++ F+H K+ SKYTLH + KF + T V + +K IY E ++
Sbjct: 1707 ESEENFNHMKSVVNAVISKYTLHWI------KFGLITFGSKVTVWENMKGIYPTEAVLRK 1760
Query: 543 MIRNPLCEMGEPIVSDLFKSKLDLFIKQTP 632
+ N G P + + S LF QTP
Sbjct: 1761 FVNNMPKPSGRPAIDKVLTSAAKLFKSQTP 1790
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 3/45 (6%)
Frame = +3
Query: 522 AEIYVKYMIRN--PLCEMGEPI-VSDLFKSKLDLFIKQTPIHTVR 647
AE Y K ++ P+ ++ EP+ V+ +F KLDL + +TP +VR
Sbjct: 270 AEEYTKLILPELKPVFKVQEPVQVTIIFLQKLDLLLSKTPKDSVR 314
>SB_19455| Best HMM Match : Amino_oxidase (HMM E-Value=0.0003)
Length = 658
Score = 28.7 bits (61), Expect = 4.8
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 231 NLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKL-MYGMLFSIKS-FVSKISPLDPK 392
N + R GT YYG R +Q S +E G + M G L S+K ++ K +D K
Sbjct: 151 NFDVQSRGGTFTYYGLAER-RQKESSFKEWGTVNMRGFLLSVKDYYLEKCEKVDKK 205
>SB_12202| Best HMM Match : SRCR (HMM E-Value=4.8e-34)
Length = 560
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = -3
Query: 564 HITDFLSYI*HKFQHKSFLGDLGRPVLGCLYSSQTSALRVSPG 436
+++DF+ Y+ + F HK+F D GR + +SS + V+ G
Sbjct: 43 YVSDFVVYVNNAFFHKTFRADTGR-INSSPFSSIPLTVNVTSG 84
>SB_38609| Best HMM Match : NAD_binding_5 (HMM E-Value=0)
Length = 603
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 456 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 605
+KF +N + + Q +L + Y+++ PL G P+V+ LFK +
Sbjct: 513 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 556
>SB_19200| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 852
Score = 28.7 bits (61), Expect = 4.8
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +3
Query: 456 LKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSK 605
+KF +N + + Q +L + Y+++ PL G P+V+ LFK +
Sbjct: 379 IKFKVNDEEEFQNFNSVLS------ILSYLLKAPLVPSGAPVVNALFKQR 422
>SB_15962| Best HMM Match : DUF528 (HMM E-Value=0.083)
Length = 1466
Score = 28.3 bits (60), Expect = 6.4
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 579 WVHPFHITDFLSYI*HKFQHKSFLGDLGRPVL 484
W +PFH FLS I F H D+ +P L
Sbjct: 306 WYYPFHYAPFLSDI-KDFSHYELKFDMSKPFL 336
>SB_1836| Best HMM Match : zf-C2H2 (HMM E-Value=0.0016)
Length = 413
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 376 EIFETND-FIEKSIPYINLPSSSIDIPDCFERF 281
E FET+D ++E Y NLP ++ P C ERF
Sbjct: 235 EFFETSDDYLEHY--YSNLPLPCLEEPSCNERF 265
>SB_51895| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1368
Score = 27.9 bits (59), Expect = 8.4
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -3
Query: 297 TVLNDSTHHNTIKYHIDRICINCKLSFFILSLEYTVSRTKKITNFHKINIPDYKN 133
++L+ +NT+KY I L ++S+++ VSR KI + + I + KN
Sbjct: 672 SMLSYEDTYNTLKYADRAKSIKVSLKRNVVSVDFHVSRYAKIVDELRTEITELKN 726
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,285,948
Number of Sequences: 59808
Number of extensions: 394592
Number of successful extensions: 898
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1841633001
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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