Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d04
         (701 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC032717-1|AAH32717.1|  145|Homo sapiens trafficking protein par...   182   1e-45
AF129332-1|AAD44697.1|  145|Homo sapiens MUM2 protein.                182   1e-45
BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.      68   4e-11
AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.      68   4e-11
AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.              68   4e-11
BC018024-1|AAH18024.1|  139|Homo sapiens trafficking protein par...    30   9.2  
BC011369-1|AAH11369.1|  139|Homo sapiens trafficking protein par...    30   9.2  
AB023170-1|BAA76797.1|  789|Homo sapiens KIAA0953 protein protein.     30   9.2  

>BC032717-1|AAH32717.1|  145|Homo sapiens trafficking protein
           particle complex 1 protein.
          Length = 145

 Score =  182 bits (443), Expect = 1e-45
 Identities = 79/144 (54%), Positives = 111/144 (77%)
 Frame = +3

Query: 219 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 398
           MT++NLY+FDR G  L+Y EW+R KQ+G+  EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 399 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEP 578
           F  ++TS+Y LH  ETP+G+K VMNTD     +RD+L  IY+ +YV+ +++NPLC +G+ 
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query: 579 IVSDLFKSKLDLFIKQTPIHTVRA 650
           + S+LF+S+LD +++  P  + RA
Sbjct: 121 VQSELFRSRLDSYVRSLPFFSARA 144


>AF129332-1|AAD44697.1|  145|Homo sapiens MUM2 protein.
          Length = 145

 Score =  182 bits (443), Expect = 1e-45
 Identities = 79/144 (54%), Positives = 111/144 (77%)
 Frame = +3

Query: 219 MTIYNLYIFDRYGTLLYYGEWNRSKQSGMSIEEEGKLMYGMLFSIKSFVSKISPLDPKDG 398
           MT++NLY+FDR G  L+Y EW+R KQ+G+  EEE KLMYGMLFSI+SFVSK+SPLD KDG
Sbjct: 1   MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60

Query: 399 FSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVRDLLKKIYAEIYVKYMIRNPLCEMGEP 578
           F  ++TS+Y LH  ETP+G+K VMNTD     +RD+L  IY+ +YV+ +++NPLC +G+ 
Sbjct: 61  FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120

Query: 579 IVSDLFKSKLDLFIKQTPIHTVRA 650
           + S+LF+S+LD +++  P  + RA
Sbjct: 121 VQSELFRSRLDSYVRSLPFFSARA 144


>BC010866-1|AAH10866.1|  219|Homo sapiens TRAPPC4 protein protein.
          Length = 219

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
 Frame = +3

Query: 324 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 500
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G+KFV+  D +  G+ 
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167

Query: 501 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 623
            LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207


>AF151862-1|AAD34099.1|  219|Homo sapiens CGI-104 protein protein.
          Length = 219

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
 Frame = +3

Query: 324 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 500
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G+KFV+  D +  G+ 
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167

Query: 501 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 623
            LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207


>AF105025-1|AAF21897.1|  219|Homo sapiens unknown protein.
          Length = 219

 Score = 67.7 bits (158), Expect = 4e-11
 Identities = 36/101 (35%), Positives = 57/101 (56%), Gaps = 1/101 (0%)
 Frame = +3

Query: 324 KLMYGMLF-SIKSFVSKISPLDPKDGFSHYKTSKYTLHCLETPSGLKFVMNTDNQAQGVR 500
           KLM   +F S+ +  S++SP     G    +T  + LHC +T +G+KFV+  D +  G+ 
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167

Query: 501 DLLKKIYAEIYVKYMIRNPLCEMGEPIVSDLFKSKLDLFIK 623
            LL+KIY EIY  + ++NP   +  PI  +LF   L L ++
Sbjct: 168 SLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNLKLALE 207


>BC018024-1|AAH18024.1|  139|Homo sapiens trafficking protein
           particle complex 2-like protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 408 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 578
           Y T  Y ++   T S +KFVM  D+    +RD  ++ ++ +++  Y  ++ NP    G+ 
Sbjct: 62  YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121

Query: 579 IVSDLF 596
           I S  F
Sbjct: 122 IQSRAF 127


>BC011369-1|AAH11369.1|  139|Homo sapiens trafficking protein
           particle complex 2-like protein.
          Length = 139

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
 Frame = +3

Query: 408 YKTSKYTLHCLETPSGLKFVMNTDNQAQGVRD-LLKKIYAEIYVKY--MIRNPLCEMGEP 578
           Y T  Y ++   T S +KFVM  D+    +RD  ++ ++ +++  Y  ++ NP    G+ 
Sbjct: 62  YPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGDR 121

Query: 579 IVSDLF 596
           I S  F
Sbjct: 122 IQSRAF 127


>AB023170-1|BAA76797.1|  789|Homo sapiens KIAA0953 protein protein.
          Length = 789

 Score = 29.9 bits (64), Expect = 9.2
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 7/67 (10%)
 Frame = +3

Query: 279 WNRSKQSGMSIEEEGKLMYGMLFSI-------KSFVSKISPLDPKDGFSHYKTSKYTLHC 437
           W R   +G+S       MYG+           K  V  I P DP+DG       K T + 
Sbjct: 45  WERRSDAGLSRGARPAEMYGVCGCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYA 104

Query: 438 LETPSGL 458
           L  P  L
Sbjct: 105 LSAPEKL 111


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,464,879
Number of Sequences: 237096
Number of extensions: 1857141
Number of successful extensions: 2789
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2786
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8119219030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)