Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d03
         (707 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   1.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    22   4.3  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    22   4.3  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   5.6  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.4  

>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 629 LQQILDSPKSNNSNLKDIALTYEW 700
           LQQI+D  + N   + +I L+ EW
Sbjct: 37  LQQIIDVDEKNQLLITNIWLSLEW 60


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 629 LQQILDSPKSNNSNLKDIALTYEW 700
           LQQI+D  + N   + +I L+ EW
Sbjct: 37  LQQIIDVDEKNQLLITNIWLSLEW 60


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 422 INDIYNWLKDLKDKYPEFVKVESIG 496
           I D Y  + DLK ++P+   + S+G
Sbjct: 82  IKDNYRKVTDLKKRFPKLKVLLSVG 106


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 680 CLLNSNYSISASRESAEACTSQNTDLSILWHEY 582
           CL+ +    S S  S E C +  +D++++  E+
Sbjct: 8   CLVYATCVYSVSEISEETCETLMSDINLIKEEF 40


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 596 LWHEYRLPQSLWTSIYFQAK*HAQREW 516
           LW E   P SL T I+ ++   A+R W
Sbjct: 512 LWSEQVGPDSLETRIWPRSAAFAERIW 538


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = -2

Query: 268 GSQNKIYRFVQRARRSPKINVKHLTQAVEEI 176
           G QNK+Y  +Q + +   I    +TQ  + +
Sbjct: 13  GQQNKMYNVIQHSPQQSIIVSGSITQPTKTV 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,207
Number of Sequences: 336
Number of extensions: 4473
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)