Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2d03
         (707 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   8e-07
SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               38   0.006
SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               31   0.69 
SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               31   1.2  
SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)               30   1.6  
SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7)                   30   2.1  
SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   29   2.8  
SB_44286| Best HMM Match : Peptidase_M14 (HMM E-Value=2.9e-08)         29   3.7  
SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)                      28   6.5  
SB_40581| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.5  

>SB_34368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 2/132 (1%)
 Frame = +2

Query: 146 RGVPVNKSHLDFFNSLSEMFDVNFWTPPGSLYKPIDFVLAPGDKKVFLKMAEEYDVYLST 325
           R +P N  H+     L      +FWT    + KP+D ++   D     +   +  +  + 
Sbjct: 25  RVIPKNHEHMRVIRDLESTDKFDFWTHVSHVGKPVDIMIPEKDFNTVSRQMSDKGIPFTV 84

Query: 326 LIADVQRAFDMQRVKSYIRRNLGSFDWNDFYRINDIYNWLKDLKDKYPEFVKVESIG--T 499
            I DV +   +++ +S   +   SF   D+ R+++I + LK L+ KY    +V +IG   
Sbjct: 85  NIPDVHKL--VEQFESRRVKRAASFSHTDYNRLSEINDKLKSLESKYGN-AQVLTIGRRR 141

Query: 500 TYEKRPILAVHV 535
           TY+ R + A+ V
Sbjct: 142 TYQGRYLRAIKV 153



 Score = 30.3 bits (65), Expect = 1.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 581 GIHAREWIGPCFVTYMLQQIL 643
           GIHAREWI P    Y + Q++
Sbjct: 486 GIHAREWISPATCMYAIDQMV 506


>SB_15763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
 Frame = +2

Query: 476 VKVESIGTTYEKRPILAVHVTLPGSKLRSKVI--VEGGIHAREWIGPCFVTYMLQQILDS 649
           V + ++G+TYE R     ++ + G  L  K +  +  GIHAREWI P    Y++ Q +  
Sbjct: 110 VTMNTVGSTYEGRQ--QYYMEIKGRSLPEKPVFFMNCGIHAREWITPATCMYIITQFITK 167

Query: 650 PKSNNS 667
            +S+ S
Sbjct: 168 YRSDKS 173


>SB_49100| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 313

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 23/102 (22%), Positives = 48/102 (47%)
 Frame = +2

Query: 242 KPIDFVLAPGDKKVFLKMAEEYDVYLSTLIADVQRAFDMQRVKSYIRRNLGSFDWNDFYR 421
           K +D  ++P  ++ F ++ E  D+    ++ D       ++V +      G FD +D++ 
Sbjct: 2   KNVDIHVSPDKRQAFEELLEASDMEFKIVVQDFSSMLAQEKVSA----RSGGFD-SDYHS 56

Query: 422 INDIYNWLKDLKDKYPEFVKVESIGTTYEKRPILAVHVTLPG 547
           +++I+  +  L   Y       S+G +YE R  LA+ +   G
Sbjct: 57  LSEIHAEILALAKAYSSVASNFSLGKSYENRDQLAIKILETG 98


>SB_24088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +2

Query: 539 LPGSKLRSKVI--VEGGIHAREWIGPCFVTYMLQQIL 643
           + G + R+K +  +  GIHAREW+ P    Y+ +Q+L
Sbjct: 1   IKGKRARNKPVFFMNCGIHAREWVSPATCMYIAKQLL 37


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = +2

Query: 314 YLSTLIAD-VQRAFDMQRVK--SYIRRNLGSFDWNDFYRINDIYNWLKDLKDKYPEFVKV 484
           +L+ L A+ VQR     R+K  S I +   S D     + N++     ++K +YPEFV +
Sbjct: 12  FLTELTAERVQRLLSHTRMKEVSRICKVYFSSDTKPAAKTNNLLCQYNEIKKRYPEFVVL 71

Query: 485 ESIGTTYE 508
             +G  YE
Sbjct: 72  FQVGDFYE 79


>SB_15820| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1998

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = +2

Query: 197 EMFDVN---FWTPPGSLYKPIDFVLAPGDKKVFLKMAEEYDVYLSTLIADVQ-RAFDMQR 364
           E FD+N   F    GS Y P+   LA     + +K   +++ +   + + V  R  D QR
Sbjct: 357 EYFDINIDPFEPLSGSSYIPLPPKLASKKAIINVKNENDHECFKWAVTSAVYPREKDPQR 416

Query: 365 VKSYIRRNLGSFDWN 409
           +   +  N G FDW+
Sbjct: 417 LSKQMIENSGKFDWS 431


>SB_37943| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 249

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = +2

Query: 518 ILAVHVTLPGSKLRSK---VIVEGGIHAREWIGPCFVTYMLQQIL 643
           ++A H+     K ++      V  GIHAREW+ P    Y++ +++
Sbjct: 53  VVAGHINGTNGKYKADKPVFFVNCGIHAREWVSPATCMYIIHELV 97


>SB_26695| Best HMM Match : Peptidase_M14 (HMM E-Value=0)
          Length = 441

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
 Frame = +2

Query: 443 LKDLKDKYPEFVKVESIGTTYEKRPILAVHVT-LPGSKLRSKVIVE--GGIHAREWIGPC 613
           L+    +YP+  ++ S+G T E R +L + ++  PG   + +   +  G +H  E +   
Sbjct: 43  LEKFNKEYPDITRLYSVGKTVENRDLLVLEISDKPGKHEKGEPEFKYIGNMHGNEVVSRE 102

Query: 614 FVTYMLQQILDSPKSNNSNLKDI 682
            +  ++  +L +    NS LK +
Sbjct: 103 ILLQLIGYLLKN-YQENSELKKL 124


>SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7)
          Length = 199

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 565 FGPQFTSRQS-DMHSENGTFFISSTNTFYFHEFRIF 461
           FG +  ++   D+H E   FF S+ NT   +EFR F
Sbjct: 35  FGARIVTKHGHDVHRELNGFFFSADNTLTIYEFRQF 70


>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 473 FVKVESIGTTYEKRPILAVHVTLPGSKLRSK 565
           F  V  + TTYE+ P+LA+H  +  +K +S+
Sbjct: 624 FDVVSVVETTYERTPVLALHTKIARAKSKSE 654


>SB_44286| Best HMM Match : Peptidase_M14 (HMM E-Value=2.9e-08)
          Length = 139

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +2

Query: 425 NDIYNWLKDLKDKYPEFVKVESIGTTYEKRPILAVHVT-LPGSKLRSK--VIVEGGIHAR 595
           ++I  W++ +  + P+   V SIG + + R I  + ++  PG     K       GIH  
Sbjct: 7   DEIGKWMQTMAKRCPKIAHVYSIGMSVQFRRIWVMELSDKPGVHQPGKPEFSYVAGIHGN 66

Query: 596 EWIGPCFVTYMLQQI 640
           E +G   V  ++Q +
Sbjct: 67  EVVGKEMVLLLIQHL 81


>SB_19775| Best HMM Match : Arm (HMM E-Value=0.27)
          Length = 607

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +2

Query: 557 RSKVIVEGGIHAREWIGPCFVTYMLQQILDSPKSNNSN 670
           R+ V+V+GG    +W+G CF  YM +  ++  +    N
Sbjct: 60  RNAVVVKGG--PCKWVGSCFEVYMDESSVEGEQGGTFN 95


>SB_40581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 34

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = +2

Query: 431 IYNWLKDLKDKYPEFVKVESIGTTYEKRPILAV 529
           IY  + +L  ++ +   ++++G TYE RP+ AV
Sbjct: 1   IYTEMDNLVRQHSQLATMQNLGNTYEGRPMKAV 33


>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 638 SAEACTSQNTDLSILWHEYRLPQSLWTSIYFQAK*HAQREWDVFH 504
           SA+A T  N+D+  L  E ++P + WTS       H    W+V H
Sbjct: 159 SAQARTLFNSDIYKLAEE-KIPSNRWTSPISSFAVHMSARWNVPH 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,557,408
Number of Sequences: 59808
Number of extensions: 479463
Number of successful extensions: 1150
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1071
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1150
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)