Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c23
         (731 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-12|CAB04532.2|  277|Caenorhabditis elegans Hypothetical p...    31   0.64 
AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical ...    30   1.5  
U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical p...    29   3.4  
U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated p...    29   3.4  
U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated p...    29   3.4  
M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related...    29   3.4  
AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical...    29   3.4  
Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical p...    28   7.8  

>Z81557-12|CAB04532.2|  277|Caenorhabditis elegans Hypothetical
           protein F59A1.8 protein.
          Length = 277

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 14/48 (29%), Positives = 30/48 (62%)
 Frame = +1

Query: 583 ETQNKLRELEMKFEGLATHTNMLMGSKEQAFEQEVNVRALKQCYREAR 726
           +T+NK R++E+K +G   H  + +   ++ FEQ++ ++  K C R+ +
Sbjct: 59  KTENKYRDMELKIDG-KQHFQLALADLKEIFEQKLELQ--KICIRQTQ 103


>AL117202-4|CAB55095.3|  222|Caenorhabditis elegans Hypothetical
           protein Y47D3A.5 protein.
          Length = 222

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = -2

Query: 424 RSGCTWRDTADTRRTLST---SAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAA 254
           +SG T+ D AD R  L     S   + +R   +  +  RPRR        RTP R     
Sbjct: 27  KSGATYVDLADVRSQLPPPPPSVGPKGVRLAPKKPHQHRPRRQFRSVRLPRTPSRNSPLT 86

Query: 253 PRSLTP 236
           P + TP
Sbjct: 87  PPTKTP 92


>U39472-5|AAK31393.1|  128|Caenorhabditis elegans Hypothetical
           protein B0304.4 protein.
          Length = 128

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = -1

Query: 638 CVARPSNFISNSLSLFWVS 582
           C+A+PS+F+ +S+S FW +
Sbjct: 30  CIAQPSSFLGSSISRFWAN 48


>Z70756-1|CAA94789.1| 1295|Caenorhabditis elegans Hypothetical
           protein T06E4.1 protein.
          Length = 1295

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/42 (30%), Positives = 25/42 (59%)
 Frame = +1

Query: 157 DVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMES 282
           D T+ +EL   L+D K    +L  ++LEL++E+  ++ +  S
Sbjct: 425 DTTELEELQKTLDDLKIDCCNLTSKMLELQSELVEVKEKATS 466


>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical
           protein T28C6.9 protein.
          Length = 1861

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = +1

Query: 136 EQDNRVFDVTQAQELINKLEDYKCSSVDLEKQLLELETEVRHIQVEMESV 285
           EQ     D  + +E   K+ED +    DLE +L E E +++ +QV +E +
Sbjct: 524 EQATTAHDA-EIREFSIKMEDARRDIADLEAKLQEAEEKLKTVQVPVEMI 572


>Z50874-12|CAA90774.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 FDVTQAQELINKLEDYKCSSVDLEK 228
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>U50135-2|AAM98043.1| 1584|Caenorhabditis elegans Uncoordinated
           protein 104, isoforma protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>U50135-1|AAM98044.2| 1628|Caenorhabditis elegans Uncoordinated
           protein 104, isoformb protein.
          Length = 1628

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>M58582-1|AAA03517.1| 1584|Caenorhabditis elegans kinesin-related
           protein protein.
          Length = 1584

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +1

Query: 94  QDNRCENHENIEICEQDNRVFDVTQAQ-ELINKLE-DYKCSSVDLEKQLLELETEVRHIQ 267
           Q+ R   H    I EQ     D   AQ EL++K   D K    D+EK++LE+E++ R  +
Sbjct: 566 QEARQSRHNLAAIAEQP---IDWKYAQQELLDKQGIDLKA---DMEKKMLEMESQYRREK 619

Query: 268 VEME 279
           VE+E
Sbjct: 620 VELE 623


>AL024499-10|CAA19710.2| 1570|Caenorhabditis elegans Hypothetical
           protein H38K22.1 protein.
          Length = 1570

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +1

Query: 154 FDVTQAQELINKLEDYKCSSVDLEK 228
           FDV  A+E+I+ + D  C+ VDL+K
Sbjct: 683 FDVPTAKEIIHLVSDTVCAKVDLKK 707


>Z81096-8|CAD54149.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 379 LSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


>Z78065-11|CAD54155.2|  922|Caenorhabditis elegans Hypothetical
           protein T09E8.1c protein.
          Length = 922

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -2

Query: 379 LSTSAEQEDLRRVVQSKYSVRPRRDTLRRHTSRTPFRPGCAAPRSLTPEAASRDQQ 212
           +S   + + LR+ + S   +R R DT RR      F P    PR  + ++  RD Q
Sbjct: 234 MSKYQKNQSLRQFLNSPVRLRKRGDTSRRDAVEAGFEPRDTVPRCHSTQSL-RDVQ 288


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,043,435
Number of Sequences: 27780
Number of extensions: 248097
Number of successful extensions: 1042
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)