Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2c21
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0705 - 5795976-5796051,5796450-5796518,5796632-5796780,579... 29 1.4
09_03_0172 - 13072575-13073800,13075919-13076054 29 1.8
09_04_0754 - 19946423-19947061,19947315-19947429,19947509-199475... 29 2.4
09_06_0261 - 21919017-21920594 28 3.2
02_04_0300 + 21784634-21784691,21784784-21784893,21787486-217877... 28 4.3
12_01_0079 + 644754-645932,645966-646061,646193-647122 27 7.4
11_01_0078 + 609005-610183,610217-610312,610444-611373 27 7.4
09_04_0746 - 19888479-19888622,19888739-19888867,19889061-198895... 27 7.4
11_04_0281 + 15733505-15733647,15734366-15734443,15734835-157350... 27 9.8
>11_01_0705 -
5795976-5796051,5796450-5796518,5796632-5796780,
5796875-5797006,5797128-5797450,5798166-5798172,
5799126-5799180,5799685-5799740,5799862-5800029,
5800912-5801097,5801269-5801419,5801515-5801743,
5802277-5802532,5802793-5802894
Length = 652
Score = 29.5 bits (63), Expect = 1.4
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 271 RCRILQIIS-LRALESVLTQSPNINETRKLKSTTNISVNTRKNSSNHENLN 420
R IL+II+ + E ++ + P + KL S N S+N ++H NLN
Sbjct: 289 RPNILEIINQINEKEDIIGELPIDHALEKLPSYNNESINLESKLASHLNLN 339
>09_03_0172 - 13072575-13073800,13075919-13076054
Length = 453
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 299 NEIICRIRHRTDTGNCVVI*TWFYIDATVFYRAYSGQYVFFSHKEQ 162
NE++C + H+ NCVV+ T F+ Y + +F H+ Q
Sbjct: 227 NEVVCLLSHKPTYPNCVVL--VVNCRNTSFWYCYPQGHTWFKHEYQ 270
>09_04_0754 -
19946423-19947061,19947315-19947429,19947509-19947587,
19947863-19948007
Length = 325
Score = 28.7 bits (61), Expect = 2.4
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +3
Query: 162 LFFVREKYVLAGVCPVKNRRIDIEPCSDDDTVSSISPMSYSANNFIARARVSTHSKPK-- 335
+ F RE +L PVK R I+P + + SP S S+ + AR S+ S K
Sbjct: 97 MVFQRELPILQ---PVKTSRFSIKPEPTSTSTRTESPTSSSSKSATPTARSSSSSSKKNF 153
Query: 336 YKRDPEI-EVDNEY 374
K DP + EV Y
Sbjct: 154 TKGDPALSEVTTAY 167
>09_06_0261 - 21919017-21920594
Length = 525
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 86 KFKAALCFHIKDEAAPRSSCCVHYVVVLCAR 178
+ A+CF + D RS+ C H+ V C R
Sbjct: 130 RLTCAICFDVFDTGGMRSAGCSHFYCVSCWR 160
>02_04_0300 +
21784634-21784691,21784784-21784893,21787486-21787771,
21788292-21788472,21788978-21789195,21789511-21789631,
21789703-21789800,21789894-21790105,21790199-21790311,
21790404-21790499,21790626-21790841,21790958-21791099,
21791280-21791525,21792078-21792389
Length = 802
Score = 27.9 bits (59), Expect = 4.3
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -1
Query: 264 YWKLCRHLNMVLYRCDGF 211
+WK+C+ L++ Y+ DGF
Sbjct: 762 FWKMCKILHLFYYQTDGF 779
>12_01_0079 + 644754-645932,645966-646061,646193-647122
Length = 734
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 231 EPCSDDDTVSSISPMSYSANNF 296
+PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563
>11_01_0078 + 609005-610183,610217-610312,610444-611373
Length = 734
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 231 EPCSDDDTVSSISPMSYSANNF 296
+PC D D ++ + P+S S +NF
Sbjct: 542 DPCYDPDAIALLGPVSESLDNF 563
>09_04_0746 -
19888479-19888622,19888739-19888867,19889061-19889548,
19889666-19889843,19889920-19889991,19890993-19891193
Length = 403
Score = 27.1 bits (57), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 243 DDDTVSSISPMSYSAN-NFIARARVSTHSKPKYKRDPEIEVDNEYIGE 383
D D+ P++ +AN F+AR ++ S P + PE E + + E
Sbjct: 149 DQDSDMQSDPIALTANFTFVARDSMTGKSAPVNRLSPETEKEKQLFAE 196
>11_04_0281 +
15733505-15733647,15734366-15734443,15734835-15735077,
15735868-15736012,15736234-15736293,15736376-15736471,
15736651-15737067,15737824-15737964,15738043-15738213,
15738394-15738651,15738741-15738889,15739060-15739557,
15740147-15740420,15740631-15740696,15740891-15741057,
15741413-15741497,15741673-15741732
Length = 1016
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/41 (26%), Positives = 26/41 (63%)
Frame = +3
Query: 246 DDTVSSISPMSYSANNFIARARVSTHSKPKYKRDPEIEVDN 368
D + S +S ++++NN+ +R+ S+ ++ +Y R ++DN
Sbjct: 292 DASKSGLSNENFASNNYTSRSYSSSLTQSQYLRSSNGDLDN 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,667,022
Number of Sequences: 37544
Number of extensions: 194045
Number of successful extensions: 507
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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