Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c19
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    27   3.9  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   3.9  
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    26   5.2  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    26   6.9  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   6.9  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.9  

>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 22/80 (27%), Positives = 37/80 (46%)
 Frame = -1

Query: 586 TSTMISCMMALSIAYKLISCTADSQGYT*YVCSRIR*LPARRSPINKKQLLAASKRSSLR 407
           T  + + ++ALS+AY   +  + S        S++   P RRS  N    L    +  LR
Sbjct: 103 TDPVQAAVLALSVAYAKPTSVSLSPTDL-QAQSKLIEKPRRRSASNATGSLNKKNQDPLR 161

Query: 406 QFSVPKRATPAGRSSSARNT 347
           +FS+ + A  A  + S  N+
Sbjct: 162 RFSISESAGAAAPTPSPSNS 181


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 105 LNNGSCPPMRPARGYRTPVAVWIE*RLHEEGL 200
           L+N   P   PA  Y   V  WIE RLH++ +
Sbjct: 127 LDNNRKPVHLPAPQYIEYVLAWIENRLHDQNV 158


>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 162 RQEYGNHEPDASVDKTHYSKHGDRVCGALNIRMTLLVKDFYKFKLKILQ 16
           RQ+Y   +  A V+K   SK   + CG++++   +LV+   K   +I++
Sbjct: 129 RQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIK 177


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = -2

Query: 342 LQQDAPNINREINVNSIMYKL*VNLAILIPETNTQSLGARSRRSTSNVDLLRASATQSKQ 163
           +++++    RE  ++ +M +    LAI + + N Q +   +RRST +  L  A+A +  +
Sbjct: 95  IERESILFEREEEISKLMERR--ELAIRLHQQNAQYMAQSTRRSTRDKPLTSAAAGKRDK 152

Query: 162 RQEYGNHEPDAS 127
             E      + S
Sbjct: 153 LTELKKRRQERS 164


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 594 LLLAYLESCLGCTRHEYITCNENSPK 671
           + L+Y   C+    +  +TC ENSPK
Sbjct: 160 VFLSYATGCVNYGHNVALTCFENSPK 185


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -2

Query: 261 LIPETNTQSLGARSRRSTSNVDLLRASATQSKQRQEYGNHEPDASVDKT 115
           L P  +T     R     S V++   S T  + +  + NHE D S+D T
Sbjct: 45  LKPIKSTSDRKRRRHSRMSIVNVWNQSPTSYRDQLLHFNHESDVSIDDT 93


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,722
Number of Sequences: 5004
Number of extensions: 61740
Number of successful extensions: 158
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)