Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c19
         (772 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1)                29   3.1  
SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)                 29   5.5  
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   28   9.6  
SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_25880| Best HMM Match : Colipase_C (HMM E-Value=5.1)
          Length = 172

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 145 VTVLLSLFGLSSACTK-KVYIACRSPAPCTK*LGVCFRYQNGQVHSQLVH 291
           V VL ++  LSSACTK + +  C +   C   L  C   +  +   QL+H
Sbjct: 4   VLVLCAIVALSSACTKLQKFQQCNNKCACASGLS-CMLTKTLEFQGQLIH 52


>SB_18985| Best HMM Match : TUDOR (HMM E-Value=8.3e-37)
          Length = 1219

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 267 AILIPETNTQSLGARSRRSTSNVDLLRASATQSK-QRQEYGNHEPDASVDKTHYSKHG 97
           A+++P       GAR+R    NV+  R SA Q++         E D+ V +T   + G
Sbjct: 584 AVVVPSPQVIPAGARNRPPPKNVEKSRLSAAQAQIHAMLISAREADSMVSRTELPQIG 641


>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -2

Query: 225 RSRRSTSN-VDLLRASATQSKQRQEYGNHEPDASVD 121
           R +++T N  DLL+ + T+S+  +E    EPDA  D
Sbjct: 38  RKKKATINPFDLLKENGTESEDDEESSTKEPDAVHD 73


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 613 SPVSAARGTSTLP-ATRTALSAIRS 684
           S VSA RGTST+P A+ + LS IRS
Sbjct: 920 SAVSARRGTSTVPEASASWLSCIRS 944


>SB_42201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 542

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/25 (64%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +1

Query: 613 SPVSAARGTSTLP-ATRTALSAIRS 684
           S VSA RGTST+P A+ + LS IRS
Sbjct: 431 SAVSARRGTSTVPEASASWLSCIRS 455


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,549,280
Number of Sequences: 59808
Number of extensions: 492557
Number of successful extensions: 1897
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1759
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1896
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)