Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c19
         (772 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putati...    30   1.5  
At3g50510.1 68416.m05524 LOB domain family protein / lateral org...    29   3.4  
At3g27670.1 68416.m03455 expressed protein                             29   4.5  
At2g15900.1 68415.m01822 phox (PX) domain-containing protein wea...    28   7.9  
At1g47340.1 68414.m05241 F-box family protein contains F-box dom...    28   7.9  

>At4g30000.1 68417.m04268 dihydropterin pyrophosphokinase, putative
           / dihydropteroate synthase, putative / DHPS, putative
           similar to dihydropterin pyrophosphokinase
           /dihydropteroate synthase [Pisum sativum]
           gi|1934972|emb|CAA69903
          Length = 554

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
 Frame = +2

Query: 497 VSRVTLRIRRARNKFVGD--GQSHHT-RDHSTSGDVTAGLLG--VLSRLHEAR 640
           VS   + +  +R +F+GD  G+   T RD +T   VTAG+LG   + R+H  R
Sbjct: 482 VSHAPILVGPSRKRFLGDICGRPEATDRDAATVASVTAGILGGANIIRVHNVR 534


>At3g50510.1 68416.m05524 LOB domain family protein / lateral organ
           boundaries domain family protein (LBD28) identical to
           SP|Q9SCS4 Putative LOB domain protein 28 {Arabidopsis
           thaliana}; similar to lateral organ boundaries (LOB)
           domain-containing proteins from Arabidopsis thaliana
          Length = 198

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -2

Query: 273 NLAILIPETNTQSLGARSRRSTSNVDLLRASATQSKQRQEYG-NHEPDASVDKTHYSKHG 97
           N  ++IPE    + G  + +   N +  R ++TQS Q QE    H+ ++  DK+ Y K G
Sbjct: 134 NNPMMIPEHTPNNGGCLTGQQLYN-EAQRFASTQSAQMQETQMQHDEESYRDKSSYQKFG 192


>At3g27670.1 68416.m03455 expressed protein
          Length = 1841

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -3

Query: 770 MCSRSRTNSLMISAIVGLERTLQYIKKSSLLIALRAVLVAGNVLVPRAAETGLQVSQ 600
           +C  SR  +L I  +  L R L+YI  ++L + ++ ++ A  V+V     TGL+V++
Sbjct: 198 LCCSSRHEALPIFRL--LMRCLKYIPGNNLEVIVKILVDAYTVVVRDLVGTGLEVTE 252


>At2g15900.1 68415.m01822 phox (PX) domain-containing protein weak
           similarity to SP|Q9Y5W8 Sorting nexin 13 {Homo sapiens};
           contains Pfam profiles PF00787: PX domain, PF02194: PXA
           domain
          Length = 1009

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 183 LHEEGLHCLSISCSVHQVIGCLFQ 254
           LH+EG HCL + C   +V+G  F+
Sbjct: 518 LHKEGQHCLKLKC---RVLGAYFE 538


>At1g47340.1 68414.m05241 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 459

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -1

Query: 466 RRSPINKKQLLAASKRSSLRQFSVPKRATPAGRSSSA 356
           R S    + L A  K +    FS+P+R TP  +SSS+
Sbjct: 80  RSSSAQPRLLFAIEKHNQWSLFSLPQRLTPYEKSSSS 116


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,086,811
Number of Sequences: 28952
Number of extensions: 331153
Number of successful extensions: 845
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)