Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c18
         (674 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    25   0.75 
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           23   1.7  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.0  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.0  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   7.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.0  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.6 bits (51), Expect = 0.75
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 110 FLPFV*FSISGDNLYTIHLLCMISEVKSLC*GYIY 6
           FLP + +  S   ++TIHLL     +  LC  Y Y
Sbjct: 208 FLPCIYYFYSAFIIFTIHLLFYCVLIILLCIYYFY 242



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 607 IFFCELLIPMNFYYYPVIKYLF 672
           +F+C L+I +  YY+     LF
Sbjct: 227 LFYCVLIILLCIYYFYYAFILF 248


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -1

Query: 215 FRRFDILLPPLTCIQRKLSGKPSMGILSRSNSCSTF 108
           ++ + ILLP  TC +   S  PS    S  ++ S++
Sbjct: 184 YQSYQILLPTPTCSEASSSPTPSHSSESSFSAASSY 219


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -2

Query: 172 KGNYQVSLQWEFYLVQTPVQHFCLLYNF 89
           K ++Q  + ++FY +  PV H    Y F
Sbjct: 423 KADFQYYVSYDFYKMNHPVYHKDPHYGF 450


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 282  YLQNNILCRNYKKAIFYSAPS 344
            Y  NN++ RN++ ++  S P+
Sbjct: 1496 YGNNNVVARNHRNSVASSIPA 1516


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 282  YLQNNILCRNYKKAIFYSAPS 344
            Y  NN++ RN++ ++  S P+
Sbjct: 1496 YGNNNVVARNHRNSVASSIPA 1516


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 282  YLQNNILCRNYKKAIFYSAPS 344
            Y  NN++ RN++ ++  S P+
Sbjct: 1496 YGNNNVVARNHRNSVASSIPA 1516


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 282  YLQNNILCRNYKKAIFYSAPS 344
            Y  NN++ RN++ ++  S P+
Sbjct: 1496 YGNNNVVARNHRNSVASSIPA 1516


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +1

Query: 583 QIQNSKN*IFFCELLIPMNFYYYPVI 660
           +I+   N ++FC +++ +N    P++
Sbjct: 325 EIEKYYNILYFCRIMVYLNSAINPIL 350


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  SYIINVLCINYHH 82
           S ++ V+ +NYHH
Sbjct: 288 SVVLTVVVLNYHH 300


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  SYIINVLCINYHH 82
           S ++ V+ +NYHH
Sbjct: 288 SVVLTVVVLNYHH 300


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  SYIINVLCINYHH 82
           S ++ V+ +NYHH
Sbjct: 288 SVVLTVVVLNYHH 300


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  SYIINVLCINYHH 82
           S ++ V+ +NYHH
Sbjct: 288 SVVLTVVVLNYHH 300


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 44  SYIINVLCINYHH 82
           S ++ V+ +NYHH
Sbjct: 288 SVVLTVVVLNYHH 300


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,434
Number of Sequences: 336
Number of extensions: 2891
Number of successful extensions: 15
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17593745
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)