Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c18
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   5.7  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   7.6  
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    25   10.0 

>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +2

Query: 503 EKSFGN--KMRINQIKNSNYTQNEKRYSSR 586
           + S+G   K R  Q K++ Y Q+E R+SSR
Sbjct: 123 DSSYGGTPKKRSRQKKSNTYVQDEIRFSSR 152


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 18/59 (30%), Positives = 25/59 (42%)
 Frame = -1

Query: 311 ISAQDIVLEIAAPTPLQTTAVAVLSSSMPVTWFRRFDILLPPLTCIQRKLSGKPSMGIL 135
           I  + I+L ++ P  L  T    L  S+   WF  F IL   +       +G   MGIL
Sbjct: 306 ILVRPIILCVSEPIVLSLTIYIGLVYSILYLWFEAFPILFTTVYHFTTIENGLVYMGIL 364


>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 22  HNDLTSDIIHNKCIVYKLSPLMENYT 99
           + +  S I+H++CI+ ++   +E++T
Sbjct: 388 YREAFSKIVHDECIILRIIKTLEDFT 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,576,102
Number of Sequences: 5004
Number of extensions: 49403
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)