Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2c18
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0132 - 21042653-21042873,21042950-21043027,21043106-210431... 67 1e-11
04_03_0958 - 21241230-21241327,21241693-21241893,21241989-212421... 58 8e-09
11_01_0428 + 3279662-3279784,3281676-3281756,3281845-3281933,328... 56 2e-08
03_05_1045 - 29914581-29914829,29914840-29916083,29919055-299191... 50 2e-06
02_02_0345 + 9212487-9212637,9213013-9213149,9213301-9213798 29 2.6
01_06_1835 + 40223645-40224148,40224893-40225189,40225344-402254... 29 2.6
03_01_0461 - 3543554-3543781,3544287-3544367,3544481-3544714,354... 29 3.4
01_06_1112 + 34606171-34606266,34607170-34607231,34607932-346080... 28 5.9
03_06_0502 - 34384285-34384503,34384595-34384755,34384854-343849... 28 7.8
>09_06_0132 -
21042653-21042873,21042950-21043027,21043106-21043167,
21043504-21043578,21043664-21043752,21043825-21043905,
21044939-21045076,21046299-21046429,21046521-21046592,
21047218-21047275,21047362-21047461,21047544-21047617,
21047701-21047836,21047913-21048137,21048211-21048446,
21048949-21049081,21049195-21049484
Length = 732
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/124 (33%), Positives = 66/124 (53%)
Frame = +1
Query: 124 FERDKIPIEGLPDNFLWMQVRGGSKMSNLLNHVTGILEDKTATAVVWSGVGAAISKTISC 303
++R + P E P +++ +M N + + T +L+DK + VV+ +G AI+KT+
Sbjct: 494 YQRVEKPREEAPIKENEIRITTQGRMRNYITYATTLLQDKGSDEVVFKAMGRAINKTVMI 553
Query: 304 AEIIKRQFSIQHQVTKLLYQIVEEHWEPKIEGLETLVVKRQIPAIHILLTSEPLKDFNQL 483
AE+IKR+ HQ T + + WEP EGL L R + I I L+ + L D + +
Sbjct: 554 AELIKRRIVGLHQNTTTGSTDITDMWEPLEEGLLPLETTRHVSMITITLSKKEL-DTSSI 612
Query: 484 GCQS 495
G QS
Sbjct: 613 GYQS 616
>04_03_0958 -
21241230-21241327,21241693-21241893,21241989-21242110,
21242462-21242536,21242626-21242714,21242808-21242888,
21243552-21243674
Length = 262
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +1
Query: 175 MQVRGGSKMSNLLNHVTGILEDKTATAVVWSGVGAAISKTISCAEIIKRQFSIQHQVTKL 354
+++ + N + + +L+D +V +G AI+KT++ E++KR+ HQ T +
Sbjct: 21 IRITAQGRTRNYITYALALLQDNATDEIVIKAMGRAINKTVAIVELLKRRIVGLHQNTSI 80
Query: 355 LYQIVEEHWEPKIEGLETLVVKRQIPAIHILLTSEPL 465
+ + WEP EGL TL R + I I L+ + L
Sbjct: 81 ESIDITDTWEPLEEGLNTLETTRHVSLITITLSKKEL 117
>11_01_0428 +
3279662-3279784,3281676-3281756,3281845-3281933,
3282011-3282085,3282211-3282269,3282316-3282414,
3282762-3283013,3283050-3283180
Length = 302
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/114 (28%), Positives = 57/114 (50%)
Frame = +1
Query: 124 FERDKIPIEGLPDNFLWMQVRGGSKMSNLLNHVTGILEDKTATAVVWSGVGAAISKTISC 303
++R + P P + +++ +M N +++ +LE+ +V +G AI+KT+
Sbjct: 4 YQRVEKPRNETPISENEIRITAQGRMRNYISYGMSLLEENGHDEIVIKAMGRAINKTVMV 63
Query: 304 AEIIKRQFSIQHQVTKLLYQIVEEHWEPKIEGLETLVVKRQIPAIHILLTSEPL 465
E+IKR+ HQ+T + + WEP EGL L R + I I L+ + L
Sbjct: 64 VELIKRRIGGLHQITSTESIDITDTWEPLEEGLLPLETTRHVSMIAITLSKKAL 117
>03_05_1045 -
29914581-29914829,29914840-29916083,29919055-29919199,
29919727-29919792,29919882-29920108,29920204-29920310,
29920428-29920502,29920600-29920688,29920768-29920848,
29921631-29921702,29922056-29922178
Length = 825
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/89 (34%), Positives = 47/89 (52%)
Frame = +1
Query: 229 ILEDKTATAVVWSGVGAAISKTISCAEIIKRQFSIQHQVTKLLYQIVEEHWEPKIEGLET 408
I D+ +V +G AISK+++ AEIIK++ +Q T + + + WEP EGL
Sbjct: 63 IQRDRRIKEIVLKAMGQAISKSVAVAEIIKKRVPGLYQDTNISSVSITDVWEPIEEGLVP 122
Query: 409 LVVKRQIPAIHILLTSEPLKDFNQLGCQS 495
L + R + I I L+ L D N G Q+
Sbjct: 123 LEMTRHVSMISITLSPRDL-DKNSPGYQT 150
>02_02_0345 + 9212487-9212637,9213013-9213149,9213301-9213798
Length = 261
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -1
Query: 194 LPPLTCIQRKLSGKP-SMGILSRSNSCSTFLPFV*FSISGDNLYTIHLLCMISEVKSL 24
LPP+T I ++ P S+ ++ +N C+ F + S + Y + L CM S L
Sbjct: 126 LPPVTSIGEQMQLPPKSLKLIRYTNLCTKFTQIAKDASSNEKAYRMALQCMSSMTDDL 183
>01_06_1835 +
40223645-40224148,40224893-40225189,40225344-40225439,
40225595-40225748,40225773-40226011
Length = 429
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 31 LTSDIIHNKCIVYKLSPLMENYTKGKNVEQEFERDKIPIEGLPDNFLWMQVRGGSKMSNL 210
L D + N+ + + +E ++K KNV +E P +G N +W QV+ NL
Sbjct: 355 LRPDYLLNQLRQIQKTKWVEIWSKLKNVSHHYEFQNPPRKGDAVNMIWRQVKHKVPAVNL 414
Query: 211 LNH 219
H
Sbjct: 415 AIH 417
>03_01_0461 -
3543554-3543781,3544287-3544367,3544481-3544714,
3545335-3545415,3545456-3545538,3546445-3546604,
3546903-3547028
Length = 330
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 238 DKTATAVVWSGVGAAISKTISCAEIIK 318
+K +V +G AISKT++ AEIIK
Sbjct: 124 EKRVKEIVLKAMGQAISKTVAIAEIIK 150
>01_06_1112 +
34606171-34606266,34607170-34607231,34607932-34608019,
34608104-34608165,34608246-34608342,34608499-34608930,
34609042-34610061,34610151-34610282,34610354-34610470,
34610982-34611062,34611321-34611447,34611547-34611592,
34611663-34611708
Length = 801
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -1
Query: 287 EIAAPTPLQTTAVAVLSSSMPVTWFRRFDILLPPLTCIQRKLSGKPSMGILSRS 126
++ + +PLQ +++ S+ + F FD LPP T +Q+ +PS+ +S
Sbjct: 455 DLLSLSPLQEPSIS--STPPSIDLFAGFDQQLPPTTSVQQSQPAEPSISSTPQS 506
>03_06_0502 -
34384285-34384503,34384595-34384755,34384854-34384931,
34385444-34385595,34385645-34385703,34385808-34385894,
34385990-34386086,34386232-34386416,34386494-34386553,
34386640-34386715,34386824-34386924,34387039-34387215,
34387302-34387399,34387505-34387604
Length = 549
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +1
Query: 385 PKIEGLETLVVKRQIPAIHILLTSEP 462
PK E L+ VK Q+PAI LTS P
Sbjct: 6 PKQEELQPHAVKDQLPAISYCLTSPP 31
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,680,978
Number of Sequences: 37544
Number of extensions: 265916
Number of successful extensions: 648
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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