Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c18
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22181-11|CAE18061.1|  206|Caenorhabditis elegans Hypothetical p...    39   0.004
Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical pr...    29   4.0  
AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical ...    27   9.2  

>Z22181-11|CAE18061.1|  206|Caenorhabditis elegans Hypothetical
           protein ZK632.14 protein.
          Length = 206

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 28/111 (25%), Positives = 49/111 (44%), Gaps = 3/111 (2%)
 Frame = +1

Query: 175 MQVRGGSKMSNLLNHVTGILEDKTATA--VVWSGVGAAISKTISCAEIIKRQFSIQ-HQV 345
           M V   SK + +  HV     +       VV+     A  K +SC E+ K+QF    +Q 
Sbjct: 30  MLVSKSSKFTKINGHVRDYFTESPDCNRFVVFKSTNGATEKAVSCVEVFKQQFEEPLYQW 89

Query: 346 TKLLYQIVEEHWEPKIEGLETLVVKRQIPAIHILLTSEPLKDFNQLGCQSI 498
           T+++       W+   EG   + V  ++P I I+++ +P     +  C S+
Sbjct: 90  TRVVCSKRIVLWKCLQEGPRDIRVTVEVPVIFIVISRDPFP--GEYSCMSM 138


>Z47808-7|CAA87771.2|  934|Caenorhabditis elegans Hypothetical
           protein D2013.5 protein.
          Length = 934

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 86  WKIIQKAKMLNRSLNEIKFPLKAYLIISFGCRSEEEVRCQT 208
           WK++ K   L R +N  K  L  Y +   G    +++ CQT
Sbjct: 809 WKLVFKKHFLERIINSSKDCLSMYQMYRQGMIEGQDIDCQT 849


>AF036705-5|AAB95172.1|  544|Caenorhabditis elegans Hypothetical
           protein F37C4.6 protein.
          Length = 544

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 208 LLNHVTGILED-KTATAVVWSGVGAAISKTISCAEIIKRQFSIQHQVTKLL 357
           LL+HV G L++ K A   V+ G+GA  +    CA+    +   +  V ++L
Sbjct: 233 LLHHVIGGLDEHKGAWGYVYGGMGAVSNAIAECAKSHGAEIYTEQDVQEVL 283


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,904,905
Number of Sequences: 27780
Number of extensions: 266932
Number of successful extensions: 709
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)