Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c17
         (737 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0323 - 20934429-20934447,20934658-20934774,20934815-209349...    28   6.7  

>01_05_0323 -
           20934429-20934447,20934658-20934774,20934815-20934964,
           20935578-20935828,20936403-20936449,20936852-20936976,
           20937039-20937154,20937194-20937284,20937772-20937893,
           20938667-20938894,20938990-20939221,20941598-20941797
          Length = 565

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 264 SSTTHLANNTFRPSLRLNRFDN*NFYTQLSH*TNLRH 154
           S+TTHL++NT      LN+ ++  F   L    +L H
Sbjct: 365 SATTHLSDNTLNAKCYLNKLESQGFEVLLPDKASLEH 401


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,859,485
Number of Sequences: 37544
Number of extensions: 206697
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)