Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c17
         (737 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical ...    32   0.49 
AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical ...    31   1.1  

>AF016674-5|AAB66127.3|  339|Caenorhabditis elegans Hypothetical
           protein C03H5.2 protein.
          Length = 339

 Score = 31.9 bits (69), Expect = 0.49
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -1

Query: 641 KQLYFLVLFVIWASWVTTLNDGGNGTCEGP--FKSTF**CANILLIHTCFYCCYSVEGIF 468
           K +  +VL V   + V TL        EGP    ST   CA I+ + TCF+  Y   G  
Sbjct: 12  KLISLVVLIVQTTALVLTLRYSQTQKSEGPRYLSSTAVVCAEIIKLITCFFVIYRNNGYR 71

Query: 467 FS 462
           FS
Sbjct: 72  FS 73


>AC087794-1|AAG53701.2|  304|Caenorhabditis elegans Hypothetical
           protein Y32G9A.8 protein.
          Length = 304

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 699 GQSKADAYRKYRYTIRVKNQTVVFFSVVCY 610
           GQSKADA  KYR  I+V + +++  ++  Y
Sbjct: 103 GQSKADASGKYRCEIKVPDNSIIIGNMFAY 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,010,113
Number of Sequences: 27780
Number of extensions: 211128
Number of successful extensions: 369
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)