Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2c13
(735 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4UM63 Cluster: Periplasmic protein TonB; n=7; Ricketts... 37 0.59
UniRef50_Q229U0 Cluster: Heterochromatin protein 1; n=1; Tetrahy... 36 1.0
UniRef50_A2ERL6 Cluster: Viral A-type inclusion protein, putativ... 35 2.4
UniRef50_A2DV96 Cluster: Putative uncharacterized protein; n=1; ... 35 2.4
UniRef50_A0DTR7 Cluster: Chromosome undetermined scaffold_63, wh... 34 3.1
UniRef50_UPI000155C908 Cluster: PREDICTED: hypothetical protein;... 34 4.2
UniRef50_UPI0000E47457 Cluster: PREDICTED: similar to leucine-ri... 34 4.2
UniRef50_Q8RGZ4 Cluster: Hemolysin activator protein; n=3; Fusob... 34 4.2
UniRef50_Q66BF8 Cluster: Putative phage l protein; n=1; Yersinia... 34 4.2
UniRef50_O51268 Cluster: Conserved hypothetical integral membran... 34 4.2
UniRef50_Q8IE35 Cluster: Putative uncharacterized protein PF13_0... 34 4.2
UniRef50_Q384N7 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q22DB8 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_A7TNQ0 Cluster: Putative uncharacterized protein; n=1; ... 33 5.5
UniRef50_Q8I5F3 Cluster: Putative uncharacterized protein; n=1; ... 33 7.3
UniRef50_A2EC82 Cluster: Putative uncharacterized protein; n=1; ... 33 7.3
UniRef50_UPI00006CFFBB Cluster: UvrD/REP helicase family protein... 33 9.6
UniRef50_Q89Z60 Cluster: Type I restriction enzyme EcoKI R prote... 33 9.6
UniRef50_A6G672 Cluster: Transcriptional regulatory protein; n=1... 33 9.6
UniRef50_Q7R9B7 Cluster: Rhoptry protein; n=4; Plasmodium (Vinck... 33 9.6
UniRef50_Q23DQ3 Cluster: Eukaryotic aspartyl protease family pro... 33 9.6
UniRef50_A6R0B1 Cluster: Predicted protein; n=9; Ajellomyces cap... 33 9.6
>UniRef50_Q4UM63 Cluster: Periplasmic protein TonB; n=7;
Rickettsia|Rep: Periplasmic protein TonB - Rickettsia
felis (Rickettsia azadi)
Length = 327
Score = 36.7 bits (81), Expect = 0.59
Identities = 21/97 (21%), Positives = 44/97 (45%)
Frame = +2
Query: 239 NVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQ 418
N++ +TK+K +E + A+K++ +K + P + K+ + + K
Sbjct: 57 NIITQTKQKEAPIENED-AKKSEQSKPKEEEPQDSPKEEKTKELEAKTIEEKPKIEEKKP 115
Query: 419 FPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSK 529
EP P+++ E + K +++ K EKK + K
Sbjct: 116 IEEPKPEEAKEALPEKKEEVKEEKPKEEEKKQTEEKK 152
>UniRef50_Q229U0 Cluster: Heterochromatin protein 1; n=1;
Tetrahymena thermophila SB210|Rep: Heterochromatin
protein 1 - Tetrahymena thermophila SB210
Length = 729
Score = 35.9 bits (79), Expect = 1.0
Identities = 27/104 (25%), Positives = 49/104 (47%)
Frame = +2
Query: 260 KKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPD 439
K+ + K+N A++ ++ + + N + NKQF ++N S+ +ST P P
Sbjct: 283 KENLTANKQNNAKEMDTYEKNQNMSNSQIQLEKNKQFYQLLMNQKSQSASSTSALIP-PQ 341
Query: 440 KSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFIVLK 571
K ++ + +T ++ N EKK + L+ DDN V K
Sbjct: 342 KQNQKNLEETQNLQN-NIKNQEKKIANNIEQLDLE-DDNLEVEK 383
>UniRef50_A2ERL6 Cluster: Viral A-type inclusion protein, putative;
n=1; Trichomonas vaginalis G3|Rep: Viral A-type
inclusion protein, putative - Trichomonas vaginalis G3
Length = 2832
Score = 34.7 bits (76), Expect = 2.4
Identities = 29/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Frame = +2
Query: 224 NDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDN-KQFLSSVLNILSK 400
NDS N+L + + + +++ N + Q+ K LKT + + + D K L V +
Sbjct: 649 NDSLQNILEDKNSELLSLKELNSTNENQINK-LKTKLDNLQKENDELKVSLQKVTERNDE 707
Query: 401 GTTSTQFPEPAPDKSGEEIIPKT----TKIERAKAMNNEKKSKFKSKILNRN 544
+T + A D E + K+ K E AK MN K+ + ++++L +N
Sbjct: 708 LENTTIKSDKANDLIQENMTLKSQMKDAKNENAKTMNEMKQIQLENELLKQN 759
>UniRef50_A2DV96 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 864
Score = 34.7 bits (76), Expect = 2.4
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 4/114 (3%)
Frame = +2
Query: 215 KTLNDSALNVLPETKK-KGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNI 391
KTL SA+ P T K K K +++ Q + + P T ++ K+
Sbjct: 109 KTLTSSAIENSPSTSKSKRRKTRKSTTSKEEQSNNSVTSTPATPTNKKKKKKKTK----- 163
Query: 392 LSKGTTSTQFPE-PAPDKSGEEI--IPKTTKIERAKAMNNEKKSKFKSKILNRN 544
+ TST P PDK EEI I + E AK N+ K K K ++R+
Sbjct: 164 --RSNTSTTLPNNQLPDKPMEEIEKIQNQFEAETAKKENSSSKKKSKKSKVSRS 215
>UniRef50_A0DTR7 Cluster: Chromosome undetermined scaffold_63, whole
genome shotgun sequence; n=3; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_63, whole genome shotgun
sequence - Paramecium tetraurelia
Length = 1023
Score = 34.3 bits (75), Expect = 3.1
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Frame = +2
Query: 305 QVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTK--I 478
Q + R T N ++ N +S N S + TQF +P P K EE + +
Sbjct: 859 QTSNRSNTYSNPLSNNLSNNPSSNSKANTKSARVSPTQFQQPPPQKKKEERGSHSDQSLS 918
Query: 479 ERAKAMNNEKKSKFKSKILNRNYDDNFIVL 568
E+ + N +K +K +K+ N F ++
Sbjct: 919 EQQRHTNRKKSTKTGTKVSILNQMSQFQII 948
>UniRef50_UPI000155C908 Cluster: PREDICTED: hypothetical protein;
n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
hypothetical protein - Ornithorhynchus anatinus
Length = 1507
Score = 33.9 bits (74), Expect = 4.2
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Frame = +2
Query: 338 QITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKT-TKIERAKAMNN---E 505
Q+ R + + +S V+N + STQ P P + E++ KT K+ +AK N
Sbjct: 568 QMLDRYEFQMSISIVMNSVEPPHKSTQRPPPLQRRLREDLKKKTGHKLSKAKQRRNRRRN 627
Query: 506 KKSKFKSKILNRNYDD 553
+K K SKIL + DD
Sbjct: 628 RKLKNDSKILEKRPDD 643
>UniRef50_UPI0000E47457 Cluster: PREDICTED: similar to leucine-rich
repeats and calponin homology (CH) domain containing 3;
n=1; Strongylocentrotus purpuratus|Rep: PREDICTED:
similar to leucine-rich repeats and calponin homology
(CH) domain containing 3 - Strongylocentrotus purpuratus
Length = 818
Score = 33.9 bits (74), Expect = 4.2
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = +2
Query: 272 YVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGE 451
Y+ +R QK + ++ P++ R DN G T TQ P P +
Sbjct: 363 YLAERASQQKEKRQQKFIPEPSRTFRPNDNHIDYIDAGEDDDDGVTPTQSPVQTPTSA-- 420
Query: 452 EIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDD 553
E+ P T ++ER KA+ EKK + + L ++
Sbjct: 421 ELDPFTKELERQKALYEEKKRVAREQRLRAEVEE 454
>UniRef50_Q8RGZ4 Cluster: Hemolysin activator protein; n=3;
Fusobacterium nucleatum|Rep: Hemolysin activator protein
- Fusobacterium nucleatum subsp. nucleatum
Length = 566
Score = 33.9 bits (74), Expect = 4.2
Identities = 19/59 (32%), Positives = 26/59 (44%)
Frame = +2
Query: 380 VLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDN 556
VLNI TT+ F + EIIP + + NE K KF +L NY ++
Sbjct: 179 VLNIRDLDTTTENFNYLEANNMTMEIIPSEIQNHSIVKLKNEMKEKFTVSVLTNNYGED 237
>UniRef50_Q66BF8 Cluster: Putative phage l protein; n=1; Yersinia
pseudotuberculosis|Rep: Putative phage l protein -
Yersinia pseudotuberculosis
Length = 349
Score = 33.9 bits (74), Expect = 4.2
Identities = 23/102 (22%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
Frame = +2
Query: 224 NDSALNVLPETKKKGIYVEKR-NFA--QKTQVTKRLKTLPNQITRRRDNKQFLSSVLNIL 394
N A L +TK++ + ++ NFA Q + ++ + P QI RD+ +++VL+ +
Sbjct: 125 NQQAATELADTKRQLEALTRQINFAGMQPAPLPEKAQVTPEQIDAIRDSFPEMAAVLDTM 184
Query: 395 SKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKF 520
+ Q +PAP +G ++ + K+ ++ +F
Sbjct: 185 VQKIDYLQQSQPAPVTNGNPVMDAMNAVPDLKSWQDQDPDRF 226
>UniRef50_O51268 Cluster: Conserved hypothetical integral membrane
protein; n=3; Borrelia burgdorferi group|Rep: Conserved
hypothetical integral membrane protein - Borrelia
burgdorferi (Lyme disease spirochete)
Length = 767
Score = 33.9 bits (74), Expect = 4.2
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 218 TLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILS 397
T+ + ++P KKK EK N K +RL L QIT+ +++ SS++ ++
Sbjct: 347 TVLPGIITLIPFAKKKSFEKEKENKLNKISFLERLAKLNTQITKSILKRKYTSSIMVLII 406
Query: 398 KG 403
G
Sbjct: 407 LG 408
>UniRef50_Q8IE35 Cluster: Putative uncharacterized protein PF13_0161;
n=1; Plasmodium falciparum 3D7|Rep: Putative
uncharacterized protein PF13_0161 - Plasmodium falciparum
(isolate 3D7)
Length = 1795
Score = 33.9 bits (74), Expect = 4.2
Identities = 39/183 (21%), Positives = 79/183 (43%), Gaps = 3/183 (1%)
Frame = +2
Query: 11 LKTRNRMNT*MINTIKKI*EQHNHNMKIIRVMQP*TL--SNVIKKMEKPNRRILXXXXXX 184
LK + NT I I + ++ N+ K + + T+ V++K + N R L
Sbjct: 1291 LKLNTKSNTSAIKKISSLGDKDNNKTKKSVLGKSGTIISKGVLEKNKGINNRPLKEAKSF 1350
Query: 185 XXXXXXXVKDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNK 364
+K LND+ P+ ++K + + +TK++KT+P+Q+ + +
Sbjct: 1351 KKLKSKIIKKTILNDNN----PKDEEKSV----KKIETSQNITKKIKTVPSQMKLEKKMR 1402
Query: 365 QFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNN-EKKSKFKSKILNR 541
+ S +L+ ++ + + DK + + K ++ M N E +K+ + N
Sbjct: 1403 KLKSEILHKVTGNISKIK------DK---KTVKKNKEMYYDDMMRNVENNNKYDNDNDNN 1453
Query: 542 NYD 550
NYD
Sbjct: 1454 NYD 1456
>UniRef50_Q384N7 Cluster: Putative uncharacterized protein; n=1;
Trypanosoma brucei|Rep: Putative uncharacterized protein
- Trypanosoma brucei
Length = 238
Score = 33.5 bits (73), Expect = 5.5
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 529 FRFKFTL--FFVVHRFRSLDFSSFWYNFFAAFVRGWFRKLRTCC 404
F KFTL FFV H F FSS+++ F F+R +F R C
Sbjct: 18 FFLKFTLMFFFVPHSFSVFFFSSYFFFSFLTFLRRFFLGERHMC 61
>UniRef50_Q22DB8 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 446
Score = 33.5 bits (73), Expect = 5.5
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Frame = +2
Query: 320 LKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMN 499
+KT NQ+T ++ N +L+ +LN L +Q E P++S +I KI K N
Sbjct: 2 IKTFSNQLTHKQINYHYLTKILNSLQ--MILSQVLELIPEESLNQIKTSILKILDEKIKN 59
Query: 500 NEKKSK-FKSKILNRNYDD 553
+K F++ I+N +D
Sbjct: 60 RYYINKHFQNAIMNYFLED 78
>UniRef50_A7TNQ0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 958
Score = 33.5 bits (73), Expect = 5.5
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +2
Query: 356 DNKQFLSSV-LNILSKGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKI 532
D K+ +SS LN L T + + K + I K + N++K K KS I
Sbjct: 50 DKKRKISSDDLNDLLSDTGDWEVTDNLVPKREDPIARKNIVTATGDSKNSKKLQKLKSNI 109
Query: 533 LNRNYDDNFIVLK 571
+ +YDD+ ++LK
Sbjct: 110 SSDDYDDDLLILK 122
>UniRef50_Q8I5F3 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 829
Score = 33.1 bits (72), Expect = 7.3
Identities = 26/109 (23%), Positives = 46/109 (42%)
Frame = +2
Query: 218 TLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILS 397
+LN + KKKG ++ +N A++ + ++K +N + S NI
Sbjct: 551 SLNFREIEKNKRDKKKGTHINNKNDAEEYMLKYKIKKKKKNF-EENNNTELNDS--NIKK 607
Query: 398 KGTTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRN 544
+ + K + II IE K +N+KK + +S I N+N
Sbjct: 608 ENNKLVEHDNSL--KQEQIIINDKNVIEHTKIYDNQKKDQVESNICNKN 654
>UniRef50_A2EC82 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 444
Score = 33.1 bits (72), Expect = 7.3
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
Frame = +2
Query: 311 TKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQFPEPAPD-KSGEEIIPKTTKIERA 487
T+RLK L +Q+ D+ + L + T S Q + K EEI T++
Sbjct: 219 TERLKELQSQLQDITDDDREAEKRLQQVQSQTDSIQASLVETERKYQEEIATLRTQLSLV 278
Query: 488 KAMNNEKKSKFKSKILNRNYD 550
KA NNE+ + K ++ +N D
Sbjct: 279 KAGNNEELERIKQEVDQQNAD 299
>UniRef50_UPI00006CFFBB Cluster: UvrD/REP helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: UvrD/REP helicase
family protein - Tetrahymena thermophila SB210
Length = 1961
Score = 32.7 bits (71), Expect = 9.6
Identities = 23/73 (31%), Positives = 36/73 (49%)
Frame = +2
Query: 209 KDKTLNDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLN 388
K + L + LN+L +T + + +K +F K +++ P QI R+ KQF SS N
Sbjct: 1783 KIQNLQQTYLNILQDTSSETVREKKCSFLTKENSKNQVQFQPQQIQERK--KQFYSS-NN 1839
Query: 389 ILSKGTTSTQFPE 427
LSK F +
Sbjct: 1840 NLSKQFNQKSFEQ 1852
>UniRef50_Q89Z60 Cluster: Type I restriction enzyme EcoKI R protein;
n=3; Bacteroides|Rep: Type I restriction enzyme EcoKI R
protein - Bacteroides thetaiotaomicron
Length = 901
Score = 32.7 bits (71), Expect = 9.6
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 10/113 (8%)
Frame = +2
Query: 254 TKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLN------ILS--KGTT 409
T+ G +E F ++T+ T +KT+ ++ T+ NK+ SV+N ILS +
Sbjct: 375 TETGGAILEGEKFKEETRYTGEVKTVSSKETKNYTNKELNRSVINPAQIKLILSTYRDVV 434
Query: 410 STQFPEPAPDKSGEEIIPKTT--KIERAKAMNNEKKSKFKSKILNRNYDDNFI 562
T+ K + +PKT + A A N + +K ++ RN DD F+
Sbjct: 435 YTELFNDPQRKPNMDYLPKTLIFALNEAHATNIVQIAK---EVFGRN-DDRFV 483
>UniRef50_A6G672 Cluster: Transcriptional regulatory protein; n=1;
Plesiocystis pacifica SIR-1|Rep: Transcriptional
regulatory protein - Plesiocystis pacifica SIR-1
Length = 210
Score = 32.7 bits (71), Expect = 9.6
Identities = 18/42 (42%), Positives = 24/42 (57%)
Frame = -1
Query: 720 AGSSMVTLFVFFPSKTSLAIAVTLLELILQTSRL*SEYNDGL 595
AG S+ TL+ +FP+K SL AV EL RL + + GL
Sbjct: 47 AGVSVGTLYQYFPNKQSLVAAVIQAELERDRQRLFAVFEGGL 88
>UniRef50_Q7R9B7 Cluster: Rhoptry protein; n=4; Plasmodium
(Vinckeia)|Rep: Rhoptry protein - Plasmodium yoelii
yoelii
Length = 2003
Score = 32.7 bits (71), Expect = 9.6
Identities = 31/113 (27%), Positives = 47/113 (41%)
Frame = +2
Query: 224 NDSALNVLPETKKKGIYVEKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKG 403
N +N+LP K K I ++ N Q+ K L + + KQ S + + S
Sbjct: 1609 NKDDINILPFKKNK-IKTDENNINQEIDQNKTTNILSTKEINTHNTKQNNESKIGLTSFN 1667
Query: 404 TTSTQFPEPAPDKSGEEIIPKTTKIERAKAMNNEKKSKFKSKILNRNYDDNFI 562
+ F +S I K +K + N+KK K K K LN+ + NFI
Sbjct: 1668 NVNKIFNGDKIYESQIFYI-KNDCHNISKIIYNQKKKK-KKKXLNKKFKYNFI 1718
>UniRef50_Q23DQ3 Cluster: Eukaryotic aspartyl protease family protein;
n=1; Tetrahymena thermophila SB210|Rep: Eukaryotic
aspartyl protease family protein - Tetrahymena
thermophila SB210
Length = 3516
Score = 32.7 bits (71), Expect = 9.6
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +1
Query: 16 NKKPHEHVNDKYN*KNIRTTQPQHENYSSY 105
N+K HVN+ YN +N TT+P H NY+S+
Sbjct: 2330 NRKFIAHVNN-YNQQNNNTTKPNHGNYTSF 2358
>UniRef50_A6R0B1 Cluster: Predicted protein; n=9; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 1672
Score = 32.7 bits (71), Expect = 9.6
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +2
Query: 278 EKRNFAQKTQVTKRLKTLPNQITRRRDNKQFLSSVLNILSKGTTSTQF--PEPAPDKSGE 451
+K Q + + + L Q+T + D + + S N + G +ST P PAP K+
Sbjct: 131 QKELIRQNSNLKDEITALRTQVTHKPDQRSWASIASNSGTNGESSTPPPAPTPAPTKADR 190
Query: 452 EIIPKTTKIERAKA 493
+ P +I A+A
Sbjct: 191 KDPPLCVRISAAQA 204
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 584,302,043
Number of Sequences: 1657284
Number of extensions: 10159397
Number of successful extensions: 30383
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 29074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30357
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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