Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte2c12
(752 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 30 0.31
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 29 0.54
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 29 0.71
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr... 29 0.94
SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces pom... 29 0.94
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 28 1.2
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp... 27 2.2
SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr... 27 2.9
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 27 3.8
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom... 26 5.0
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 5.0
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 26 5.0
SPBC1773.03c |||aminotransferase class-III, unknown specificty|S... 26 6.6
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R... 26 6.6
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 6.6
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 25 8.8
SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 8.8
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 25 8.8
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 30.3 bits (65), Expect = 0.31
Identities = 16/67 (23%), Positives = 30/67 (44%)
Frame = +3
Query: 108 PCAHRRPTLVEIDRSHQSASEEKPRKHPSPVREFTARILKSLNRDKDARRDDNTKKTDLN 287
P ++ T + ++ + +H P E + KSLN D+ +R +N+ + + N
Sbjct: 2 PSLNQEETPKKTKNPYRKGHSRRQSRHSIPSDELNSNSSKSLNNDRISRTIENSLQKETN 61
Query: 288 SCKPQKK 308
S KK
Sbjct: 62 SDNKIKK 68
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 29.5 bits (63), Expect = 0.54
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 1/113 (0%)
Frame = +1
Query: 397 PETVQTPIQKKRHFHTSSLLSLMKNESNNGKFPDKSQLNEAGLGRIVSRMDQKRNALSTH 576
PET Q ++ T + NNG P K +E LG+ S Q+ + H
Sbjct: 617 PETKQNIADIRKTTLTDQTEEFTERRDNNGSIPSKQPSDEQHLGK-ESLPSQQSTVSNHH 675
Query: 577 SAGSIELHVPPGAERVRVDVTITSSSNDITLLPPLDSSDQPSRRTNE-KHVKK 732
SI P + R + + S T L PS++ E +H ++
Sbjct: 676 RKESIPSKQPTEGQHARQE---SLPSQQTTETKHLRKESTPSKQPTEGQHTRQ 725
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 29.1 bits (62), Expect = 0.71
Identities = 14/44 (31%), Positives = 27/44 (61%)
Frame = +1
Query: 418 IQKKRHFHTSSLLSLMKNESNNGKFPDKSQLNEAGLGRIVSRMD 549
IQKK+ +T SL S +++ N+ + D ++LNE ++ ++D
Sbjct: 13 IQKKKKKNTKSLQSSLESAENDPFWTDANELNELEGPAVIYKID 56
>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 697
Score = 28.7 bits (61), Expect = 0.94
Identities = 11/43 (25%), Positives = 25/43 (58%)
Frame = -1
Query: 263 VISPRIFVAVQTF*YSCCEFSNRRWMLSWFFLRSRLVTAVDFY 135
++ +I +A+ T S C+++ L+W F+ R+ A++F+
Sbjct: 422 LLHSKIHLAISTLKDSGCDWNVGLSYLNWLFVNKRITEAINFF 464
>SPAC6B12.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 117
Score = 28.7 bits (61), Expect = 0.94
Identities = 21/54 (38%), Positives = 25/54 (46%)
Frame = +3
Query: 144 DRSHQSASEEKPRKHPSPVREFTARILKSLNRDKDARRDDNTKKTDLNSCKPQK 305
++S S SE SP E RILKS NR D R +K LNS K +
Sbjct: 63 EKSSMSCSELAKLYGVSP--ESIRRILKSSNRPLDDREKSRKEKRWLNSLKSNR 114
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 28.3 bits (60), Expect = 1.2
Identities = 21/101 (20%), Positives = 43/101 (42%)
Frame = +3
Query: 123 RPTLVEIDRSHQSASEEKPRKHPSPVREFTARILKSLNRDKDARRDDNTKKTDLNSCKPQ 302
+P + + +SA E+KP K P V+ T K + R +DN +K + + +
Sbjct: 429 KPEAQPVSKPKESAEEQKPSKEPE-VKPTTPSASK-VEEPSKKRDEDNHQKEETVTQPKR 486
Query: 303 KKDRCAIATSRAPLAPRCRKPNIMDKIKEKSPRDCTDTDPK 425
+K + + +P ++ + E+ + +D PK
Sbjct: 487 EKTPVEKSFPKPASSPVTFSEDVKKEPSEEKKLEVSDEAPK 527
>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
Alp13|Schizosaccharomyces pombe|chr 1|||Manual
Length = 337
Score = 27.5 bits (58), Expect = 2.2
Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +3
Query: 120 RRPTLVEIDR-SHQSASEEKPRKHPSPVREFTARILKSLNRDKDARRDDNTKKTDLNSCK 296
R + V +D SH+ S K +K SP+ + R + ++++ + +N +K D
Sbjct: 106 RESSTVTVDGDSHELPSRIKTQKSESPIPQQVKRDGTTDAKNEETTKPENNEKDDFEEEP 165
Query: 297 PQKKDRCAI 323
P K + ++
Sbjct: 166 PLPKHKISV 174
>SPAC18G6.11c |rrn3||ribosomal DNA |Schizosaccharomyces pombe|chr
1|||Manual
Length = 599
Score = 27.1 bits (57), Expect = 2.9
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -3
Query: 294 YKNLNQSFLCCHLAAHLCRGSNFLIFVL*ILEPEM-DAFL 178
Y +L +SF+ L CR + FLIF L+PE D FL
Sbjct: 340 YNSLIKSFVNTVLKTFRCRYTQFLIFWASQLDPEFTDIFL 379
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/64 (31%), Positives = 29/64 (45%)
Frame = -1
Query: 476 DSFFIKESNDDVWK*RFFWIGVCTVSGGFFFYFVHYIWFAAARGQGGS*RSNCTSIFLLG 297
D+FF K+ W FW VCT++ F YF + W A + S + C + +G
Sbjct: 99 DAFF-KDYGAAEWTLFGFWCLVCTLALIFLTYF-YETWVKAVKVTVIS-LAKCVKVISIG 155
Query: 296 LTRI 285
L I
Sbjct: 156 LFNI 159
>SPCPJ732.01 |vps5||retromer complex subunit
Vps5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 5.0
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 4/117 (3%)
Frame = -2
Query: 562 RFSS-DPFAIQSDLALLHLTVTCREIYHCLIHSSLRKAMMMYGNDVFFGSVSVQSLGDFS 386
+FS DP I++ L L + +YH L+ S ++ F +V SL D
Sbjct: 358 KFSEQDPILIEAKDTLDSLETQLKSVYHALLLSIDQRIQFASAIHDFGEAVGNLSLVDLE 417
Query: 385 FILSIIF-GLRQRGA--RGARDVAIAHRSFFWGLQEFKSVFFVLSSRRASLSRFKLF 224
LS F GL Q R ++ +A + G + + +V S++ A +R KL+
Sbjct: 418 PTLSSKFDGLSQLQVELRFVQERKVAQDNLTLGTTLEEYIRYVESAKNAFTTRQKLW 474
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 5.0
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 2/119 (1%)
Frame = +1
Query: 394 PPETVQTPIQKKRHFHTSSLLSLMKNESNNGKFPD--KSQLNEAGLGRIVSRMDQKRNAL 567
P + Q+P H H S L+L N N + P+ S L+ L + S +
Sbjct: 224 PLASDQSPTVSSNHIHASGNLALGSNSGLNPRSPNSFSSPLDNPALHTVDSTNVNGSLSP 283
Query: 568 STHSAGSIELHVPPGAERVRVDVTITSSSNDITLLPPLDSSDQPSRRTNEKHVKKAPST 744
++S+ ++H + TI+ + +++ + P SS PS + + PST
Sbjct: 284 LSNSSSINQVH-----QNETHGSTISVPNPNLSQMGPSHSSSVPSNLSPNPAQNENPST 337
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 26.2 bits (55), Expect = 5.0
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 135 VEIDRSHQSASEEKPRKHPSPVREF 209
V + + S+S+ K RKHPSP + +
Sbjct: 276 VPLTSASHSSSDGKSRKHPSPYKPY 300
>SPBC1773.03c |||aminotransferase class-III, unknown
specificty|Schizosaccharomyces pombe|chr 2|||Manual
Length = 459
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +3
Query: 606 TWSRKSPRRRNYYFFLQ*HHTPPTI 680
T S ++NY F+ +H PPT+
Sbjct: 7 TTSSDKSEKKNYLFYTSPNHRPPTV 31
>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
Rec11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 923
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 412 TPIQKKRHFHTSSLLSLMKNESNN 483
+P +KKR + T SL +NE NN
Sbjct: 43 SPSEKKRKWGTQDEFSLTENEENN 66
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +1
Query: 646 SSSNDITLLPPLDSSDQPSRRTNEKHVKKAPSTR 747
S++ND + PP DSS ++ T + + ++APS +
Sbjct: 472 STTNDSS--PPKDSSSTSTQPTEQSNAQQAPSPK 503
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Frame = +3
Query: 3 EQTAYCGPNRQPPPPRCVELVPDDACRIRNSDHLNPCAHR------RPTLVE 140
++ CG + PP C+ L+P C+ + + PC+H RPTL E
Sbjct: 177 QELVLCGSSESGPPECCICLMPVLPCQ---ALFVAPCSHSYHYKCIRPTLNE 225
>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 394 PPETVQTPIQKKRHFHTSSLLSLMKNESNNGKFPDKSQ 507
PP V++P+Q+ R F +SS + KN P+ ++
Sbjct: 228 PPSNVKSPVQQHRSFVSSSARA-KKNWGRQSNSPNSNK 264
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 8.8
Identities = 15/69 (21%), Positives = 26/69 (37%)
Frame = +3
Query: 225 KSLNRDKDARRDDNTKKTDLNSCKPQKKDRCAIATSRAPLAPRCRKPNIMDKIKEKSPRD 404
+ L KD + + K + KP + + A T + N K+ P+D
Sbjct: 311 EELEMKKDTSKPTASTKEVVVEKKPDESRKQAARTLETVSEEQMGSSNAKSKVLTSEPKD 370
Query: 405 CTDTDPKKT 431
T + +KT
Sbjct: 371 STSVEAEKT 379
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 144 DRSHQSASEEKPRKHPSPVREFTARILKSLN 236
D Q +++ R PSP+R +L+SLN
Sbjct: 171 DNDSQIDAQDLSRSTPSPLRSAMENVLQSLN 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,372,442
Number of Sequences: 5004
Number of extensions: 76300
Number of successful extensions: 273
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 273
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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