Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c09
         (734 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...   191   5e-49
Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical pr...    31   0.64 
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.5  
U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical p...    28   6.0  
Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   6.0  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   7.9  

>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score =  191 bits (465), Expect = 5e-49
 Identities = 88/195 (45%), Positives = 137/195 (70%), Gaps = 4/195 (2%)
 Frame = +2

Query: 161 KKVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA- 337
           K++ +YK  L  +AE L+ + FP+K+++ + LL++       L+++  D ++ IP P A 
Sbjct: 11  KELVEYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDAL 70

Query: 338 ---TSNNEPNAKRQRLDSSELSSNSTIEGTRVYVLPNGSVPCNKPLSDLIHLVKPHIREL 508
              T ++EP  KRQR+D          +G  ++   +G+VPCN+ L+ L+ LV+P +R+ 
Sbjct: 71  NGTTDSDEPAVKRQRVDEKP-------KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDA 123

Query: 509 VEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAAFFDQISRYFISRAKI 688
           VE  N +KMWI+ +IP+IEDGNNFGV IQE+TL+E+++VESEAA+F DQ+SRYF +R K+
Sbjct: 124 VEQCNNVKMWITLLIPRIEDGNNFGVGIQEETLSEVRNVESEAASFLDQMSRYFTTRGKL 183

Query: 689 VSKVAKYPHIDDYRR 733
           ++K+AKYPH+DDYRR
Sbjct: 184 ITKIAKYPHVDDYRR 198


>Z93389-9|CAB07670.2|  391|Caenorhabditis elegans Hypothetical
           protein T13F3.2 protein.
          Length = 391

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = +2

Query: 116 LNPYKVIHLIMTDVAKKVQDYKDSLKLKAEHL---IIKGFPEKIVKLNELLETSNFQNRN 286
           LNP  + H++  DVA+K+Q+ K S  L+  ++   ++    EK++  + L     + N+ 
Sbjct: 280 LNP--IFHILFDDVARKLQNLKPS-SLEINYMLWQLVWFVAEKVLNEDNLRHGEQYTNQL 336

Query: 287 LSDVH 301
            SD+H
Sbjct: 337 ASDLH 341


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +2

Query: 263 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNS 403
           T+N        +   +  P+PTPP T+ +E     +  D + L+ NS
Sbjct: 492 TANQTGSTDGTITSGIQSPVPTPPVTNEHESQRSSRLSDFTNLAGNS 538


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 242 KLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNST 406
           K +  L+ S+   RN S V ++ + P P PP  S  +P  + Q L   E  + ++
Sbjct: 123 KSDSSLDISSLTGRNSSSVLEECSSPSPVPPPRS-PKPKKRTQFLTEEETDAETS 176


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 275 QNRNLSDVHQDLNIPIPTPPATSNNEPN 358
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>U28738-7|AAA68312.1|  341|Caenorhabditis elegans Hypothetical
           protein T28D9.3a protein.
          Length = 341

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 263 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTI 409
           T  F N +     Q L +P   PP T  N  + +R RLD+   S++S+I
Sbjct: 274 TDLFSNNSTESETQPLLLP--RPPRTPRNSEDEERHRLDAVLPSTDSSI 320


>U28738-5|AAT92055.1|  342|Caenorhabditis elegans Hypothetical
           protein T28D9.3b protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 263 TSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSSNSTI 409
           T  F N +     Q L +P   PP T  N  + +R RLD+   S++S+I
Sbjct: 275 TDLFSNNSTESETQPLLLP--RPPRTPRNSEDEERHRLDAVLPSTDSSI 321


>U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical
           protein T25D10.5 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -3

Query: 390 NSDESSL*RLAFGSLFDV-AGGVGIGMFKS*CTSDKFRF 277
           NSD+ S+ +   G   D   GG+ + +F S  TS+K+RF
Sbjct: 9   NSDKYSI-KSVLGKFCDTNCGGINVSLFVSETTSNKYRF 46


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 275 QNRNLSDVHQDLNIPIPTPPATSNNEPN 358
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 161 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 337
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 75  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134

Query: 338 TSNNEPNAKRQRLDSSELSSNSTIE 412
           TS  E + K   L+  E+SS    E
Sbjct: 135 TSMREADLK-MLLELKEMSSQQKDE 158


>Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 161 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 337
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 84  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143

Query: 338 TSNNEPNAKRQRLDSSELSSNSTIE 412
           TS  E + K   L+  E+SS    E
Sbjct: 144 TSMREADLK-MLLELKEMSSQQKDE 167


>Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 161 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 337
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 75  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134

Query: 338 TSNNEPNAKRQRLDSSELSSNSTIE 412
           TS  E + K   L+  E+SS    E
Sbjct: 135 TSMREADLK-MLLELKEMSSQQKDE 158


>Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +2

Query: 161 KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 337
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 84  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143

Query: 338 TSNNEPNAKRQRLDSSELSSNSTIE 412
           TS  E + K   L+  E+SS    E
Sbjct: 144 TSMREADLK-MLLELKEMSSQQKDE 167


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 552 IINEIHILSKFESSTSSLMCGLTRCIRSL 466
           ++NEI +LS   +  SS+M  L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +3

Query: 456 TSHSVILYILLSHTLGNLLKIQTY 527
           TSHS++L  +LS ++ NLLKI  +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,780
Number of Sequences: 27780
Number of extensions: 343187
Number of successful extensions: 1105
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1051
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)