Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte2c08
         (676 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI000049A0B9 Cluster: hypothetical protein 5.t00042; n...    34   3.6  
UniRef50_Q83AN7 Cluster: Putative uncharacterized protein; n=2; ...    33   8.4  
UniRef50_Q4AJY1 Cluster: ATP-dependent DNA helicase RecQ:ATP-req...    33   8.4  
UniRef50_Q54UC9 Cluster: Kinesin 3; n=4; Dictyostelium discoideu...    33   8.4  

>UniRef50_UPI000049A0B9 Cluster: hypothetical protein 5.t00042; n=1;
           Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 5.t00042 - Entamoeba histolytica HM-1:IMSS
          Length = 530

 Score = 33.9 bits (74), Expect = 3.6
 Identities = 21/47 (44%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 194 QMYVKLFSRSFASLVLVLVTQSK--SSRVRGSCMIILFVLPCSLRYS 328
           +MYV   SRS+ +L+  LVT  K  SS       I  F+LP  LRYS
Sbjct: 112 RMYVNRLSRSYITLLKTLVTSIKDCSSESTEFLSICQFLLPIELRYS 158


>UniRef50_Q83AN7 Cluster: Putative uncharacterized protein; n=2;
           Coxiella burnetii|Rep: Putative uncharacterized protein
           - Coxiella burnetii
          Length = 203

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = -1

Query: 556 FVLGIYWISQTTQSVVFFYDIQ 491
           F++G+YWI+ T Q  +F++D +
Sbjct: 144 FLVGVYWIADTAQRTIFYFDFK 165


>UniRef50_Q4AJY1 Cluster: ATP-dependent DNA helicase
           RecQ:ATP-requiring DNA helicase RecQ; n=8;
           Chlorobiaceae|Rep: ATP-dependent DNA helicase
           RecQ:ATP-requiring DNA helicase RecQ - Chlorobium
           phaeobacteroides BS1
          Length = 674

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 14/55 (25%), Positives = 29/55 (52%)
 Frame = +2

Query: 47  GQKTGNERKFWRNIITKCCIRK*SVISVGVWHSIAIIESAITCIRSEPNQMYVKL 211
           G   G  +KFWR +I +   +K    S G++ ++ ++E A+  ++ E     V++
Sbjct: 515 GVGKGRSKKFWRQLIDELLAQKVIAKSEGLYPALYLLEKAVPLLKGEEKLEIVRI 569


>UniRef50_Q54UC9 Cluster: Kinesin 3; n=4; Dictyostelium
           discoideum|Rep: Kinesin 3 - Dictyostelium discoideum AX4
          Length = 1193

 Score = 32.7 bits (71), Expect = 8.4
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = -2

Query: 465 LMAVLQFKPENKIDLAQK*FGLISVLPEIDS 373
           +  V +F+P+NK++LAQ    ++S+ PE DS
Sbjct: 4   IRVVCRFRPQNKLELAQGGDSIVSIAPENDS 34


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 634,519,309
Number of Sequences: 1657284
Number of extensions: 12132789
Number of successful extensions: 24852
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24850
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)